BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2961.p
         (286 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094522|ref|YP_001099597.1| proton conductor component of m...   374   e-105
gi|134094540|ref|YP_001099615.1| chemotaxis motA protein [Hermin...    69   3e-13

>gi|134094522|ref|YP_001099597.1| proton conductor component of
           motor, torque generator [Herminiimonas arsenicoxydans]
          Length = 208

 Score =  374 bits (959), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/208 (84%), Positives = 197/208 (94%)

Query: 79  MALLFEILTKSRKEGLMSIEGDIEEPESSPIFSKYPGVLADHHLIEFMTDYLRLMVSGNM 138
           M LLFEILTK RKEGLMSIEGDI+ PE S IF+KYP VLADHH+IEF+TDYLRLMVSGNM
Sbjct: 1   MTLLFEILTKVRKEGLMSIEGDIDAPEESAIFTKYPTVLADHHIIEFITDYLRLMVSGNM 60

Query: 139 DAFQIENLMDNEIETHHHEGEIPVHCIAKLGDGMPAFGIVAAVMGVVHTMESVGIPPSEL 198
           DAFQIENLMDNEI+THH EGEIPVHCIAK+GDG+PAFGIVAAVMGVVHTM SVG+PP+EL
Sbjct: 61  DAFQIENLMDNEIDTHHAEGEIPVHCIAKMGDGLPAFGIVAAVMGVVHTMASVGLPPAEL 120

Query: 199 GMLIAHALVGTFLGILLAYGFVGPLSSLLEQKLHESTKIYQCVKVTLLASLNGYAPALSI 258
           G+LIA+ALVGTFLGILLAYGFV PLSS LEQKLHES+K++QC+KVTLLASLNGYAPAL++
Sbjct: 121 GILIANALVGTFLGILLAYGFVSPLSSTLEQKLHESSKVFQCIKVTLLASLNGYAPALAV 180

Query: 259 EFGRKVLFSTERPTFLELEEHVKQAKSK 286
           EFGRKVLFSTERP+F ELE+H+KQ+KSK
Sbjct: 181 EFGRKVLFSTERPSFSELEDHIKQSKSK 208


>gi|134094540|ref|YP_001099615.1| chemotaxis motA protein
           [Herminiimonas arsenicoxydans]
          Length = 226

 Score = 68.9 bits (167), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 98/219 (44%), Gaps = 28/219 (12%)

Query: 20  MAGGHLGALFQPIELLMIGGAAGGAFLVGNNGKAIKATLKALPTVFKGSAYTKALYMELM 79
           + GG LG+L QP   +++     GA L+ +  +     LK    VF         Y  LM
Sbjct: 2   LEGGKLGSLVQPAAFIIVIVGTIGAVLLQSGWRNFANGLKMAGRVFVPQDDN---YASLM 58

Query: 80  ALLFEILTKSRKEGLMSIE---GDIEEPESSPIFSKYPGVLADHHLIEFMTDYLRLMVSG 136
             +    T +R+EGL+S+E    D+ +P                    F+   LRL+V G
Sbjct: 59  HDVTNWSTVARREGLLSLERMIKDVNDP--------------------FVAHGLRLIVDG 98

Query: 137 NMDAFQIENLMDNEIETHHHEGEIPVHCIAKLGDGMPAFGIVAAVMGVVHTMESVGIPPS 196
            +D  ++  ++D EI  +  +  + +      G   P  GI+ AV+G++H ME++   PS
Sbjct: 99  -VDPHKLREVLDMEIGAYETQQRLSIKIWEAAGGYAPTIGILGAVLGLIHVMENLS-DPS 156

Query: 197 ELGMLIAHALVGTFLGILLAYGFVGPLSSLLEQKLHEST 235
            LG  IA A V T  G+  A     P+SS L+  ++   
Sbjct: 157 RLGSGIAVAFVATIYGVGFANLVFLPISSKLKAIVNRDV 195


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.140    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 543,975
Number of extensions: 22766
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 205
Effective length of database: 733,452
Effective search space: 150357660
Effective search space used: 150357660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)