BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2957.p (703 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094526|ref|YP_001099601.1| chemotaxis protein cheA [Hermin... 929 0.0 gi|134095906|ref|YP_001100981.1| putative composite two componen... 226 3e-60 gi|134094187|ref|YP_001099262.1| putative chemotaxis protein Che... 208 6e-55 >gi|134094526|ref|YP_001099601.1| chemotaxis protein cheA [Herminiimonas arsenicoxydans] Length = 697 Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/710 (67%), Positives = 569/710 (80%), Gaps = 20/710 (2%) Query: 1 MEKLLLAVNVESPDPEDLNAVFRAAHSIKGGSSTFGLTDIAEVTHVLESLLDRIRQGQMA 60 MEKLLLAV+V SPD EDLNA+FRAAHSIKGG+ TFG+TD+ EVTHVLE+LLDRIR+G+MA Sbjct: 1 MEKLLLAVDVSSPDEEDLNAIFRAAHSIKGGAGTFGITDLTEVTHVLETLLDRIRKGEMA 60 Query: 61 LTSEHVDAFLAAKDVLKSMLDGHKHGAEVDQEAVAQVRMLLEALSQGKSSSAAAPKAAAA 120 L EHVDAFL+AKD+LK LDGH+ VD +AV +VR++LEALS + +A A A Sbjct: 61 LKPEHVDAFLSAKDILKMQLDGHRLHTPVDLDAVTEVRLMLEALSLDDDAVPSAAAVAPA 120 Query: 121 PVAAVVGPGGVRRYRLDMPVIADKDADALADELSMLGKLEKSKSPEGRWVFILDTAEPID 180 V RR+R+++P + +D DALA EL +LG++ + + R VF+L T E D Sbjct: 121 AHVDGVAARTDRRFRIELPQVPPRDVDALAAELGLLGEISRDTLADQRAVFVLSTHEGPD 180 Query: 181 DVVAICAFIVNVADLKISQAVEAAQGSDEERGYGFFDNFVTQEERERTQGYGFFD----- 235 D++AIC+FI++ DLKI++ A S G + + + E QGYGFF+ Sbjct: 181 DIIAICSFILDPQDLKITEESVVAIVS------GGHQSIDQRSQSEAQQGYGFFEPLHSV 234 Query: 236 --NHTAIEDKEREQGYGFFAPFVPLDISPKKAEADGAAHATGNGNGNAHHDDAHLHGEHA 293 TA ++KE QGYGFFAPFVPL+ P A A A A + + HH A A Sbjct: 235 IAGETAQKEKENAQGYGFFAPFVPLE--PAPASAHKATDAADDEDDQHHHTAAADKKTAA 292 Query: 294 SAEKKAAKGGAGLAQESSSIRVSIEKVDQLINLVGELVITQAMIEQRVGKLDPMHHEHLL 353 + K A+ + ESSSIRV IEKVDQLINLVGELVITQAMIEQR LDPM HE LL Sbjct: 293 KRDDKMAQ-----SAESSSIRVGIEKVDQLINLVGELVITQAMIEQRTDSLDPMLHERLL 347 Query: 354 NSVSQLSRNTRDLQESVMSIRMMPMDYVFSRFPRMVRDLAHKLGKQVEFVTHGAATELDK 413 NSVSQL+RNTRDLQE+VMSIRMMPMDYVFSRFPRMVRDLA KLGK++EFVT GAATELDK Sbjct: 348 NSVSQLTRNTRDLQEAVMSIRMMPMDYVFSRFPRMVRDLAGKLGKKIEFVTQGAATELDK 407 Query: 414 GLIERIVDPLTHLVRNSIDHGIELPEARRAAGKGEAGVLSLSAEHQGGNIIIEVTDDGGG 473 GLIERIVDPLTHLVRNSIDHGIE+PEAR AAGK AG LSLSA HQGGNIIIEV+DDGGG Sbjct: 408 GLIERIVDPLTHLVRNSIDHGIEMPEARTAAGKAPAGQLSLSASHQGGNIIIEVSDDGGG 467 Query: 474 LNRDKILAKAKQQGMPVTDNLSDADVWQLIFEPGFSTAEQVTDVSGRGVGMDVVKRNILA 533 LNR++ILAKA+Q+GM V++ + D DVWQLIF PGFSTAE VTDVSGRGVGMDVVKRNI A Sbjct: 468 LNRERILAKARQKGMEVSNEMPDGDVWQLIFAPGFSTAEAVTDVSGRGVGMDVVKRNITA 527 Query: 534 MGGAVDIRSSKGFGTTISISLPLTLAILDGMSIRIGEEVYILPLGYVVESLQPLPQDIKE 593 MGGAV+IRSSKGFGTTISISLPLTLAILDGMSI++GEE+YILPLGYVVESLQP P+D+KE Sbjct: 528 MGGAVEIRSSKGFGTTISISLPLTLAILDGMSIKVGEEIYILPLGYVVESLQPEPEDVKE 587 Query: 594 ISGQGQVLRVRGEYLPLIPLYQIFNIEPSFTDPSQGLVVILESDGKKAALFVDDLIGQQQ 653 ISGQG+V++VRG+YLPLIPLY++F+IEP+FTDPS+G+VVILES+G+KAALF+D+L+GQQQ Sbjct: 588 ISGQGKVVKVRGDYLPLIPLYKMFDIEPNFTDPSEGIVVILESEGRKAALFIDELVGQQQ 647 Query: 654 IVVKNLESNYRKVAGISGATILGDGGVALIVDVAALLRSSRQLNDESVFS 703 +VVKNLESNYRKVAGISGATILGDGGV+LI+DVAALLRSSRQLNDES++S Sbjct: 648 VVVKNLESNYRKVAGISGATILGDGGVSLIIDVAALLRSSRQLNDESIYS 697 >gi|134095906|ref|YP_001100981.1| putative composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein [Herminiimonas arsenicoxydans] Length = 1969 Score = 226 bits (576), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 129/336 (38%), Positives = 198/336 (58%), Gaps = 11/336 (3%) Query: 360 SRNTRDLQESVMSIRMMPMDYVFSRFPRMVRDLAHKLGKQVEFVTHGAATELDKGLIERI 419 +R TRDLQ+ +M +RM+ + R R+ R A ++ K+V G+A E+D+ ++E++ Sbjct: 1466 ARLTRDLQQDLMRVRMVQFASISERLYRVTRQAAKEMDKRVNLDIRGSAVEVDRSVLEKM 1525 Query: 420 VDPLTHLVRNSIDHGIELPEARRAAGKGEAGVLSLSAEHQGGNIIIEVTDDGGGLNRDKI 479 P HL+RN+I HGIE E RRAAGK E G L + +G ++I +DDG GLN + I Sbjct: 1526 AGPFEHLLRNAIVHGIESREKRRAAGKSETGELRIEIRQEGNEVVIHFSDDGQGLNLNSI 1585 Query: 480 LAKAKQQGM-PVTDNLSDADVWQLIFEPGFSTAEQVTDVSGRGVGMDVVKRNILAMGGAV 538 +KA Q G+ D LSDA+V LIF PGFSTAE++T+++GRG+GMDVV+ ++GG V Sbjct: 1586 RSKALQNGLVKAEDALSDAEVTDLIFHPGFSTAEEITELAGRGIGMDVVRSEAASLGGRV 1645 Query: 539 DIRSSKGFGTTISISLPLTLAILDGMSIRIGEEVYILPLGYVVESLQ-----PLPQDIKE 593 I S G G +I LPLTLA+ + + G + Y +P +VE +Q PL E Sbjct: 1646 AIASEPGKGAYFTIHLPLTLAVTQVVILSTGGKTYAIP-SVLVEQVQQLKNGPLATAYNE 1704 Query: 594 ISGQGQVLRVRGEYLPLIPLYQIFNIEPSFTDPSQGLVVILESDGKKAALFVDDLIGQQQ 653 + Q RV YL + + + + + ++IL+S + AL VD+++G ++ Sbjct: 1705 GAVMWQSQRVPMHYLSAL----LGDTDAAPVTQQYSPLMILKSGSDRVALHVDEILGNRE 1760 Query: 654 IVVKNLESNYRKVAGISGATILGDGGVALIVDVAAL 689 +VVKN+ ++ GI+GAT+LG G + LI++ L Sbjct: 1761 VVVKNIGPQLSRMIGIAGATVLGSGEIVLILNPVPL 1796 >gi|134094187|ref|YP_001099262.1| putative chemotaxis protein CheA [Herminiimonas arsenicoxydans] Length = 609 Score = 208 bits (530), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 143/405 (35%), Positives = 221/405 (54%), Gaps = 28/405 (6%) Query: 304 AGLAQESSSIRVSIEKVDQLINLVGELV------------ITQAMIEQRVGKLDPMHHEH 351 AG+ +ES IRV K+D L+ + GE V + Q +E + L Sbjct: 214 AGIKEES--IRVDAVKLDALLEVAGESVQAANQASVLLEKLAQFPVEGQAATL----MAA 267 Query: 352 LLNSVSQLSRNTRDLQESVMSIRMMPMDYVFSRFPRMVRDLAHKLGKQVEFVTHGAATEL 411 L ++++ SR + +LQ + +S RM P+ +F +FPR+VR+LA LGK V+ GA TE+ Sbjct: 268 LAETLNRASRYSTELQRATLSTRMQPVGKLFQKFPRLVRELAKDLGKDVDLQIEGAETEV 327 Query: 412 DKGLIERIVDPLTHLVRNSIDHGIELPEARRAAGKGEAGVLSLSAEHQGGNIIIEVTDDG 471 D+ +++ + DPL H++RNS+DHGIE R A GK V+ L A + +++IE++DDG Sbjct: 328 DRVVVDSLYDPLVHMLRNSLDHGIEDNATRTANGKSTKSVILLKAWQEASSVMIEISDDG 387 Query: 472 GGLNRDKILAKAKQQGMPV-TDNLSDADVWQLIFEPGFSTAEQVTDVSGRGVGMDVVKRN 530 G+N +++ AKA +G+ T + ++ QL+F PGFST E VSGRGVGMDVVK Sbjct: 388 KGMNGEQLRAKAISKGLIADTAAQTQEEMLQLVFLPGFSTKEVANSVSGRGVGMDVVKTA 447 Query: 531 ILAMGGAVDIRSSKGFGTTISISLPLTLAILDGMSIRIGEEVYILPLGYVVESLQPLPQD 590 + GA+ I S+ G GT SI LP+ L+I+ M +R + LP+ VV+ + LP + Sbjct: 448 VEKHRGAITIDSTLGVGTRFSIRLPIELSIVPTMLVRSSDAALALPMA-VVQRVVELPDE 506 Query: 591 IKEISGQGQVLRVRGEYLPLIPLYQIFNIEPSFTDPSQGLVVILESDGKKAALFVDDLIG 650 + + G VLR +G LP+ L E V I+ S + L V + G Sbjct: 507 FEHVGG-APVLRDQGRPLPVRSLAGSLGYELGVEK-----VGIVISAPQPYILSVGAVEG 560 Query: 651 QQQIVVKNLESNYRKVAGISGATILGDGGVALIVDVAALLRSSRQ 695 +V+K + + V GI+G +G + L+V ++ LL +RQ Sbjct: 561 TADLVIKPMTA--ITVPGIAGTARSAEGELVLVVGLSFLLEGARQ 603 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,128,703 Number of extensions: 43598 Number of successful extensions: 202 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 189 Number of HSP's successfully gapped: 4 Length of query: 703 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 615 Effective length of database: 710,387 Effective search space: 436888005 Effective search space used: 436888005 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)