BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2955.p
         (415 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094990|ref|YP_001100065.1| hypothetical protein HEAR1784 [...   444   e-126

>gi|134094990|ref|YP_001100065.1| hypothetical protein HEAR1784
           [Herminiimonas arsenicoxydans]
          Length = 416

 Score =  444 bits (1143), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/423 (54%), Positives = 295/423 (69%), Gaps = 15/423 (3%)

Query: 1   MRRPAKRSSSKLSADSQHLVTFAQAIAQASSRLEERAWLKPLDALLNKLLRTGHQGLLDA 60
           MRRP+K    KLS DSQ L T AQAI QASSRLEER W + LD LL KLL+T HQ ++DA
Sbjct: 1   MRRPSKNIPHKLSPDSQRLATLAQAIIQASSRLEERNWERQLDLLLRKLLKTHHQEVIDA 60

Query: 61  ALDHLFKADLDAYDVLIEAVEAGSESTTLEHDGQDYDVQLLVLPVLAWTRFAIASGPIAG 120
           ALDHLFK +  AYD L+E  EA SES  +E DG  YD  L+ +P+LAWTRF+IASG I  
Sbjct: 61  ALDHLFKLESAAYDALMECAEAASESCQIEQDGVCYDALLIAMPILAWTRFSIASGAIPA 120

Query: 121 DLLSAIGAHLHAHVLATDARLALAPALFSIEQLPRVHADVFALTRQMGQSALKNAPVQMR 180
           ++++ + AHL AH+LAT+ ++A+ P LFSI+QLPR HA+ FALT++M Q+ALK++P++  
Sbjct: 121 EMVTTLSAHLQAHMLATETKMAMMPNLFSIDQLPRSHAETFALTQKMAQAALKDSPLKQV 180

Query: 181 GEQPPTAAFLADTRYVIAAVAVPAGGALFHWQDSEQQSHFSAN---KAAAFEAWKQQATP 237
            +QP TA FLADTRY++A V   AG  LF WQ        SAN   +  A   W  QA P
Sbjct: 181 AQQPETAPFLADTRYLLAVVTAVAGEPLFRWQ-------ISANLQERDEALAQWNTQAMP 233

Query: 238 LFTRLLPGCSVELLLPQAYFFGCREADKRIRPASIRAADYFLTQTLDIASSELHASIGGF 297
              RLLPGC +ELLLP+AYF  CRE DK+IRPASIRAA ++LT TL++  ++L A IG F
Sbjct: 234 NIARLLPGCGIELLLPEAYFVACREGDKQIRPASIRAAVHYLTYTLNVEPNDLQAIIGSF 293

Query: 298 SED-INGQIDEYRIGFSIGDDPTVVYGTVWPLYEQESGEEL---PMMIPAGAGLLEGLP- 352
            E+  +G++DEYRI F++ ++  VVYG VWPLY QE  EEL    M +P+   +   +  
Sbjct: 294 GEESTDGRVDEYRISFALMENMEVVYGIVWPLYGQEDDEELQYRAMEVPSDPVISADVER 353

Query: 353 PSPLQQILMVLRECGIVHIKHHAERFTMEFCDDCGAPLFPDREGELVHAEMPEDTPPPVE 412
            SP+++IL +L ECG++++K HAE F ME CDDCGAPLFPD + EL HAEMPED P    
Sbjct: 354 KSPIEEILALLEECGVINVKRHAELFAMEVCDDCGAPLFPDMDAELTHAEMPEDAPTGST 413

Query: 413 HFH 415
           H H
Sbjct: 414 HLH 416


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 770,008
Number of extensions: 31301
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 331
Effective length of database: 723,567
Effective search space: 239500677
Effective search space used: 239500677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)