BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2953.p
         (181 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094988|ref|YP_001100063.1| putative signal peptide protein...   135   2e-33

>gi|134094988|ref|YP_001100063.1| putative signal peptide protein
           [Herminiimonas arsenicoxydans]
          Length = 170

 Score =  135 bits (339), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 79/106 (74%), Gaps = 3/106 (2%)

Query: 63  AEDDDS---EPELSGTQSADFQCEMGNKLTIWKNDADDKHIAIRWNKRIHRLTRVATTTG 119
            EDDD    E  + G+   +F CE+GNK+T + N +DDKH+AIRW  ++HR+ R+ T+TG
Sbjct: 61  VEDDDEDLGEANIEGSIVNNFNCELGNKITTYYNASDDKHLAIRWKDKVHRMRRIGTSTG 120

Query: 120 ANRFENHKMGLVWIGIPAKGLLLDSKKGQQLANECKNADQIKAAAA 165
           ANRFEN K+GLVWI IP+K +LLDS KG QLANEC++ +Q KA AA
Sbjct: 121 ANRFENRKVGLVWIHIPSKAMLLDSGKGLQLANECRDPEQAKAFAA 166


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.124    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 180,560
Number of extensions: 5954
Number of successful extensions: 8
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 105
Effective length of database: 749,927
Effective search space: 78742335
Effective search space used: 78742335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)