BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2951.p
         (324 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094986|ref|YP_001100061.1| malate dehydrogenase [Herminiim...   595   e-172

>gi|134094986|ref|YP_001100061.1| malate dehydrogenase
           [Herminiimonas arsenicoxydans]
          Length = 329

 Score =  595 bits (1535), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 298/323 (92%), Positives = 309/323 (95%)

Query: 1   MRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIPDEKAQKALKGVIMEIDDCAF 60
           MRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEI +EKAQ ALKGVIMEIDDCAF
Sbjct: 6   MRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIDNEKAQNALKGVIMEIDDCAF 65

Query: 61  PLLAGVTAHSDPMTAFKDADIALLVGARPRGPGMERKDLLEANAQIFTVQGKALDAVASR 120
           PLLAGV+AHSDPMTAFKD DIALLVGARPRGPGMERKDLLEANAQIFTVQGKALDAVASR
Sbjct: 66  PLLAGVSAHSDPMTAFKDVDIALLVGARPRGPGMERKDLLEANAQIFTVQGKALDAVASR 125

Query: 121 NVKVLVVGNPANTNAYIAMKSAPNLPAKNFTAMLRLDHNRALSQVAAKIGKPVSAIEKLC 180
           NVKVLVVGNPANTNAYIAMKSAPNLPAKNFTAMLRLDHNRALSQ+AAK GKPV+AIEKL 
Sbjct: 126 NVKVLVVGNPANTNAYIAMKSAPNLPAKNFTAMLRLDHNRALSQIAAKTGKPVTAIEKLT 185

Query: 181 VWGNHSPTMYADYRFATADGASVKDTINDQEWNKNVFLPTVGKRGAAIIEARGLSSAASA 240
           VWGNHSPTMY DYRFAT DG SVK+ IND+ WNK+VFLPTVGKRGAAIIEARG+SSAASA
Sbjct: 186 VWGNHSPTMYPDYRFATIDGKSVKEAINDEVWNKDVFLPTVGKRGAAIIEARGVSSAASA 245

Query: 241 ANAAIDHVRDWVLGTNGKWTTMGIPSDGSYGIPEGTMFGFPVTTENGEYKIVQGLEIDEF 300
           ANAAIDHVRDWVLGTNGKW TMGIPSDGSYGIP+ TMFGFPVTTENGEYKIVQGLEID F
Sbjct: 246 ANAAIDHVRDWVLGTNGKWVTMGIPSDGSYGIPKDTMFGFPVTTENGEYKIVQGLEIDAF 305

Query: 301 SQERINITLKELMEEREGVKHLV 323
           SQERIN+TLKEL EEREGVKHL+
Sbjct: 306 SQERINLTLKELSEEREGVKHLL 328


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 617,463
Number of extensions: 25104
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 242
Effective length of database: 730,157
Effective search space: 176697994
Effective search space used: 176697994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)