BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2950.p
         (267 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094985|ref|YP_001100060.1| GntR family transcriptional reg...   384   e-108
gi|134096476|ref|YP_001101551.1| putative regulator protein [Her...   180   6e-47
gi|134096485|ref|YP_001101560.1| putative regulator protein [Her...   176   8e-46

>gi|134094985|ref|YP_001100060.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 312

 Score =  384 bits (987), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/268 (68%), Positives = 224/268 (83%), Gaps = 1/268 (0%)

Query: 1   VVKFEVMSSILPNSNNAD-AQAAGAGAASPAPTFSPLYQQIKALIMQRLEAGEWKPGELI 59
           VVK  +MSS  P+ + A+ AQAAGA A  P+PTFSPLYQQIKALI + L++GEW+PGELI
Sbjct: 45  VVKSILMSSSHPSLSIANPAQAAGASATVPSPTFSPLYQQIKALITKSLQSGEWRPGELI 104

Query: 60  PSEVELGSRFKVSQGTVRKAIDELAAENLVVRRQGKGTFVATHHETQAQFRFLRLMADSE 119
           PSE+EL +RFKVSQGTVRKAIDEL+AENLVVRRQGKGTFVATHHE +AQFRFLRL  D  
Sbjct: 105 PSEIELANRFKVSQGTVRKAIDELSAENLVVRRQGKGTFVATHHEARAQFRFLRLKPDVG 164

Query: 120 EPQRPENKIIEVKRVRASAEVARQLDMKSGDSVIFIRRVKSFNGAPIILEDIWLPGAIFK 179
           + Q PEN + E +R+RA A++ARQLD+K+GDSV F++R++SF+GAP ILE++WLPG+IFK
Sbjct: 165 DAQYPENTVTEARRLRAPADIARQLDIKTGDSVFFVKRIQSFDGAPTILEELWLPGSIFK 224

Query: 180 GLTAERLVEYRGPLYGLFESEFGTRMIRAEERIRAVGADQDAAEFLGVAPQTPLLSVERA 239
           GL+ ER+++Y+GP+Y L E+EFG +MIRA E IRAV ADQ AAE L +   TPLLSV R 
Sbjct: 225 GLSLERVLQYKGPMYALLETEFGIQMIRAVENIRAVVADQSAAELLMLPLNTPLLSVNRV 284

Query: 240 SFTYGDKPVEMRRGLYLTTNHHYQSELS 267
           SFTYGDK VE+RR LY+T NHHYQ+ELS
Sbjct: 285 SFTYGDKAVEVRRSLYVTNNHHYQNELS 312


>gi|134096476|ref|YP_001101551.1| putative regulator protein
           [Herminiimonas arsenicoxydans]
          Length = 247

 Score =  180 bits (457), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 95/232 (40%), Positives = 137/232 (59%), Gaps = 1/232 (0%)

Query: 34  SPLYQQIKALIMQRLEAGEWKPGELIPSEVELGSRFKVSQGTVRKAIDELAAENLVVRRQ 93
           + LY+++K  +++ L AGEWKPGE IP+E +L   F VS GT+RKAIDEL AEN+++R Q
Sbjct: 12  TTLYKEVKRRVLRALAAGEWKPGEAIPAEKKLCELFSVSIGTLRKAIDELVAENILIRHQ 71

Query: 94  GKGTFVATHHETQAQFRFLRLMADSEEPQRPENKIIEVKRVRASAEVARQLDMKSGDSVI 153
           G+GTFV+ H+  Q  FRF  +         P  ++I   + +A     ++L  + G  V 
Sbjct: 72  GRGTFVSMHNREQQMFRFFNVANHDGTKSYPHLELIAFAKKKAGTLAVQKL-RQPGSKVY 130

Query: 154 FIRRVKSFNGAPIILEDIWLPGAIFKGLTAERLVEYRGPLYGLFESEFGTRMIRAEERIR 213
               V S  GAP+I++DI +P  +F GLT   L      LY L++  FG  +IR EER+R
Sbjct: 131 EFTNVLSLQGAPVIVDDITVPDLLFVGLTEAVLRNRPNTLYSLYQVRFGISIIRIEERLR 190

Query: 214 AVGADQDAAEFLGVAPQTPLLSVERASFTYGDKPVEMRRGLYLTTNHHYQSE 265
           AV AD   A+ L +A   PLL V R +++Y D+PVE R     T +H Y ++
Sbjct: 191 AVSADARYADLLHLAIGAPLLEVRRVAYSYDDQPVEWRISHINTEHHEYMAQ 242


>gi|134096485|ref|YP_001101560.1| putative regulator protein
           [Herminiimonas arsenicoxydans]
          Length = 248

 Score =  176 bits (447), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 89/229 (38%), Positives = 132/229 (57%)

Query: 34  SPLYQQIKALIMQRLEAGEWKPGELIPSEVELGSRFKVSQGTVRKAIDELAAENLVVRRQ 93
           + LY++++  +++ L AGEWKPGE IP+E +L  RF VS GT+RKAIDEL AEN+++R Q
Sbjct: 14  TTLYKEVQKQVLRALAAGEWKPGEAIPAEKKLCERFSVSIGTLRKAIDELVAENILIRHQ 73

Query: 94  GKGTFVATHHETQAQFRFLRLMADSEEPQRPENKIIEVKRVRASAEVARQLDMKSGDSVI 153
           G+GT+VA H+  Q  FRF  +   S     P+  ++E  + RA    A +L + +   V 
Sbjct: 74  GRGTYVAQHNRAQQMFRFFNVTDHSGNKTYPQLSLVEFAKRRADKHAAEKLLLPATGKVF 133

Query: 154 FIRRVKSFNGAPIILEDIWLPGAIFKGLTAERLVEYRGPLYGLFESEFGTRMIRAEERIR 213
               +      P+I++DI LP  +F  LT  ++      LY L++ +FG  +IR EER+R
Sbjct: 134 AFTNLLYLQEQPVIVDDIVLPEPLFVSLTEAQIRNRPNTLYNLYQIDFGLSVIRTEERLR 193

Query: 214 AVGADQDAAEFLGVAPQTPLLSVERASFTYGDKPVEMRRGLYLTTNHHY 262
           A    +  A  LG+   TP+L V R +F+Y D P+E R     T  H Y
Sbjct: 194 AAPVGEKHAALLGLKLGTPILEVRRVAFSYNDLPIEWRISYINTEKHEY 242


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 434,867
Number of extensions: 16582
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 3
Length of query: 267
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 187
Effective length of database: 736,747
Effective search space: 137771689
Effective search space used: 137771689
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)