BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2949.p
         (136 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094984|ref|YP_001100059.1| succinate dehydrogenase, hydrop...   164   2e-42

>gi|134094984|ref|YP_001100059.1| succinate dehydrogenase,
           hydrophobic subunit, cytochrome b556 with SdhD
           [Herminiimonas arsenicoxydans]
          Length = 136

 Score =  164 bits (414), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/136 (65%), Positives = 107/136 (78%)

Query: 1   MSEAAKPQRPQFRNIHLTQIAGYRMPLAAIVSIMHRISGLFLFLMLPFILFLLDSSLLSE 60
           MS++ K  +PQFRNI++  +  YRMPLAAIVSIMHRISG  +FL+LP IL LLD SL+SE
Sbjct: 1   MSDSLKTGKPQFRNINIADLVHYRMPLAAIVSIMHRISGALIFLLLPVILLLLDKSLMSE 60

Query: 61  GTFAYLKGLASGWFVKLVILALSWAYLHHFCAGIRHLIMDNHIGLDKDSARKSSATVLVV 120
            +F + KG+AS WFVKL+ILAL WAYLHHFCAGIRHL  D H+G+DK   RKS+  VL +
Sbjct: 61  ISFEHFKGIASHWFVKLIILALVWAYLHHFCAGIRHLFADVHVGVDKVKGRKSAVIVLAI 120

Query: 121 SITLMVLVALKLFGAF 136
           S+ L  LVALKLFGAF
Sbjct: 121 SLPLTALVALKLFGAF 136


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.332    0.142    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 199,848
Number of extensions: 5588
Number of successful extensions: 21
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 1,000,347
Length adjustment: 73
Effective length of query: 63
Effective length of database: 759,812
Effective search space: 47868156
Effective search space used: 47868156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 124 (52.4 bits)