BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2947.p (592 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094982|ref|YP_001100057.1| succinate dehydrogenase, cataly... 1090 0.0 gi|134094609|ref|YP_001099684.1| L-aspartate oxidase [Herminiimo... 256 2e-69 gi|134096484|ref|YP_001101559.1| fumarate reductase, or succinat... 246 2e-66 >gi|134094982|ref|YP_001100057.1| succinate dehydrogenase, catalytic and NAD/flavoprotein subunit [Herminiimonas arsenicoxydans] Length = 592 Score = 1090 bits (2819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 512/592 (86%), Positives = 558/592 (94%) Query: 1 VAAIKSAITTRRFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGA 60 +AAIKS+I +R FDA+I+GAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGA Sbjct: 1 MAAIKSSIPSRHFDAIIIGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGA 60 Query: 61 SLGNMSEDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIY 120 SLGNM+EDNWYWHMFDT+KGSDYLGDQDAIEFMCREAPK VYELEHFGMPFDRN DGTIY Sbjct: 61 SLGNMAEDNWYWHMFDTIKGSDYLGDQDAIEFMCREAPKVVYELEHFGMPFDRNADGTIY 120 Query: 121 QRPFGGHTANLGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNEEG 180 QRPFGGHTAN GEKPVQRACAAADRTGHALLHTLYQRNVRA+THFFVEWMA+DL+R+ G Sbjct: 121 QRPFGGHTANFGEKPVQRACAAADRTGHALLHTLYQRNVRARTHFFVEWMAIDLMRDAAG 180 Query: 181 DVLGVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQD 240 DV+GVVALEMETGE+MML AKTT+FATGGAGRI+AASTNAFINTGDG+GMAARAGLPL+D Sbjct: 181 DVIGVVALEMETGEVMMLEAKTTMFATGGAGRIFAASTNAFINTGDGLGMAARAGLPLED 240 Query: 241 MEFWQFHPTGVAGAGVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPRDFVSRSMDQ 300 MEFWQFHPTGVAGAGVLITEGVRGEGGIL+NS GERFMERYAPTLKDLAPRDFVSRSMDQ Sbjct: 241 MEFWQFHPTGVAGAGVLITEGVRGEGGILVNSQGERFMERYAPTLKDLAPRDFVSRSMDQ 300 Query: 301 EIKEGRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVVPTIHYQ 360 EIKEGRG GP+KD+V+LDLRHIGADTI+KRLPSILEIAHKFANVDAT+E IPVVPTIHYQ Sbjct: 301 EIKEGRGCGPNKDYVMLDLRHIGADTIQKRLPSILEIAHKFANVDATREAIPVVPTIHYQ 360 Query: 361 MGGIPTNVHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVVFGRAAG 420 MGGIPTN+HGQVV PK G+ VV G+YAIGECACVSVHGANRLGTNSLLDL+VFGRAAG Sbjct: 361 MGGIPTNIHGQVVEPKDGNPNHVVNGLYAIGECACVSVHGANRLGTNSLLDLIVFGRAAG 420 Query: 421 NHIVGTRLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVANDIRATMQKYCGVFRT 480 NHI+ + L+ + HKP+PA A D +L R+AHLE+STG ERVQ+VANDIR+TMQ+YCGVFRT Sbjct: 421 NHILKSNLKQREHKPLPADAADLALSRLAHLENSTGGERVQNVANDIRSTMQQYCGVFRT 480 Query: 481 DALLQEGYKKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKATITSAAARKES 540 D LLQ GYKKIMELDERRKHVSFKDKS+VFNTARVEALELDN+IE AKATITSAAARKES Sbjct: 481 DELLQTGYKKIMELDERRKHVSFKDKSRVFNTARVEALELDNMIEVAKATITSAAARKES 540 Query: 541 RGAHAHSDYEQRDDVNWLKHTLWFSEGNRLDYKPVNMQPLTVETFKPKARTF 592 RGAHAH DYE RDD NWLKH+L++S+GNRLDYKPV M+PLTV+TFKPK RTF Sbjct: 541 RGAHAHRDYELRDDENWLKHSLFYSDGNRLDYKPVVMKPLTVDTFKPKPRTF 592 >gi|134094609|ref|YP_001099684.1| L-aspartate oxidase [Herminiimonas arsenicoxydans] Length = 534 Score = 256 bits (655), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 189/560 (33%), Positives = 290/560 (51%), Gaps = 67/560 (11%) Query: 12 RFDAVIVGAGGSGMRASLQLAEAGLNVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWY 71 +FD IVG+G +G+ +L LAE V ++SK + AQGGI A L S D+ Sbjct: 2 KFDVAIVGSGLAGLTVALHLAETR-KVTIISKRTLLDGASNWAQGGIAAVLD--SNDSVD 58 Query: 72 WHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEHFGMPFDRNPDGTIYQRPFGGHTANL 131 H+ DT+ L D+ A F+ +A+ L G+PF ++ + G H Sbjct: 59 EHVADTLVAGGGLCDEPATRFILEHGREAIEWLIEQGVPFTQDASAEL-----GFHLTRE 113 Query: 132 GEKPVQRACAAADRTGHALLHTLYQR-----NVR-AKTHFFVEWMALDLIRNEEG--DVL 183 G +R AAD TGHA+ TL ++ N+ + H+ ++ + D++ ++G L Sbjct: 114 GGHGQRRIIHAADATGHAVQVTLEEKVRNHPNITLMEHHYAIDVITSDVLEKKKGVPRCL 173 Query: 184 GVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLPLQDMEF 243 G+ +++TG+++ + A+ T+ ATGGAG+++ +TN TGDG+ MA RAG + +MEF Sbjct: 174 GLYVQDVKTGKVITIAAEHTVLATGGAGKVYLYTTNPDTATGDGIAMAWRAGCRIANMEF 233 Query: 244 WQFHPTGV---AGAGVLITEGVRGEGGILI------NSNGERFMERYAPTLKDLAPRDFV 294 QFHPT + LITE VRGEGG+L + G+RFM + +LAPRD V Sbjct: 234 IQFHPTCLYHPYAKSFLITEAVRGEGGVLKLPVTAGKNRGKRFMPSHDER-AELAPRDIV 292 Query: 295 SRSMDQEIKEGRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPIPVV 354 +R++D E+K+ RG+ D+V LD+ + +K+ P+I+ + +D TK PIPVV Sbjct: 293 ARAIDAEMKK-RGI----DYVDLDISDKSPEFLKEHFPTIMARCLELG-IDMTKGPIPVV 346 Query: 355 PTIHYQMGGIPTNVHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLDLVV 414 P HY GG+ T++ G+ P G+YA+GE C +HGANRL +NSLL+ +V Sbjct: 347 PAAHYTCGGVITDLSGRTDLP----------GLYAVGEATCTGLHGANRLASNSLLECLV 396 Query: 415 FGRAAGNHIVGTRLQDQSHKPIPAGALDRSLERIAHLESSTGSERVQDVAN---DIRATM 471 GR+ +I Q K + A D S T ++ +AN ++R M Sbjct: 397 LGRSTAQYIDTQPKQ----KAVSLPAWDES--------RVTDADEEVIIANNWDELRRFM 444 Query: 472 QKYCGVFRTDALLQEGYKKIMELDERRKHVSFKDKSKVFNTARV--EALELDNLIETAKA 529 Y G+ RT L+ +I L E + + + R+ + LEL NL+E A Sbjct: 445 WNYVGIVRTTKRLERAQHRIRLLKE--------EIDEYYANFRITPDLLELRNLVEVASL 496 Query: 530 TITSAAARKESRGAHAHSDY 549 + SA +R+ESRG H DY Sbjct: 497 IVNSALSRRESRGLHYSRDY 516 >gi|134096484|ref|YP_001101559.1| fumarate reductase, or succinate dehydrogenase, flavoprotein subunit [Herminiimonas arsenicoxydans] Length = 580 Score = 246 bits (628), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 188/597 (31%), Positives = 295/597 (49%), Gaps = 45/597 (7%) Query: 3 AIKSAITTRRFDAVIVGAGGSGMRASLQLAEAG--LNVAVLSKVFPTRS-HTVAAQGGIG 59 +IK +T D +++G+GG+G+ A+L +A L++ V K +S T QGG Sbjct: 6 SIKRVVT----DILVLGSGGAGLFAALHAHQANPELSITVAVKGLLGKSGCTRMVQGGYN 61 Query: 60 ASLGNMSEDNWYWHMFDTVKGSDYLGDQDAIEFMCREAPKAVYELEH-FGMPFDRNPDGT 118 +L D+ H DT++G +L DQD + +A + ++ELE+ G FDRNPDGT Sbjct: 62 VALAE--GDSIERHFMDTIEGGKWLSDQDLAWTLVTKAIERIHELENELGCFFDRNPDGT 119 Query: 119 IYQRPFGGHTANLGEKPVQRACAAADRTGHALLHTLYQRNVRAKTHFFVEWMALDLIRNE 178 ++Q+ F G T R D TG +++ L ++ E A++LI+ Sbjct: 120 VHQKAFAGQT-------FDRTVHKGDLTGIEIMNRLAEQIWHRGIARLEEHRAVELIKTA 172 Query: 179 EGDVL-GVVALEMETGEIMMLHAKTTLFATGGAGRIWAASTNAFINTGDGMGMAARAGLP 237 +G L GV+ ++M GE + + AK L ATGG ++ T + + DG+ MA RAGLP Sbjct: 173 DGKSLAGVLMIDMRCGEFVFVQAKAVLLATGGGPTMYKFHTPSGEKSCDGLAMALRAGLP 232 Query: 238 LQDMEFWQFHPTGVAGA------GVLITEGVRGEGGILINSNGERFMERYAPTLKDLAPR 291 L+DME QFHPTG+ G ++ EG+RG GG L+N ERFM+ Y P K+ A R Sbjct: 233 LRDMEMVQFHPTGLLAGPDTRMTGTVLEEGLRGAGGYLLNGLKERFMQNYDPR-KERATR 291 Query: 292 DFVSRSMDQEIKEGRGVGPHKDHVLLDLRHIGADTIKKRLPSILEIAHKFANVDATKEPI 351 D VSRS+ E++ GR P+ V + + H+G + ++ + ++E D + + Sbjct: 292 DIVSRSIYSEMRAGR-TTPNGG-VYIQMAHLGPEKVRVQFKGMVERCAD-CGFDLAADLV 348 Query: 352 PVVPTIHYQMGGIPTNVHGQVVAPKGGSMKEVVQGMYAIGECACVSVHGANRLGTNSLLD 411 VVPT HY MGG+ + P + G++A GE VHGANRLG N + + Sbjct: 349 EVVPTAHYMMGGV-------IFRP---DCTTALHGLFAAGEDTG-GVHGANRLGGNGVAN 397 Query: 412 LVVFGRAAGNHIVGTRLQDQSHKPIPAGALDRSLE-RIAHLESSTGSERVQDVANDIRAT 470 VFG AG + L + + A++ S+ A + G+ +Q + + Sbjct: 398 STVFGGIAGESMAAWLLNNNELREPDIAAIELSITAHRAPFGNPIGN--LQALREALYEC 455 Query: 471 MQKYCGVFRTDALLQEGYKKIMELDERRKHVSFKDKSKVFNTARVEALELDNLIETAKAT 530 M + G+ RT L+ G K+ ELD + D FN + + L +L+ ++ Sbjct: 456 MWEDVGILRTAEGLRRGIAKLAELDRELLTIGVADDDPAFNMTWHDWMNLRSLLAVSRVI 515 Query: 531 ITSAAARKESRGAHAHSDYEQRDDVNWLKHTLWFSEGNRLDYKPVNMQPLTVETFKP 587 T+A AR++SRGAH D Q + +T+ +G+ L V Q + KP Sbjct: 516 ATAALAREDSRGAHFREDAPQTSALATSAYTVVKQDGDAL---TVTTQAVNFVRVKP 569 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,193,882 Number of extensions: 53302 Number of successful extensions: 196 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 179 Number of HSP's successfully gapped: 3 Length of query: 592 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 505 Effective length of database: 713,682 Effective search space: 360409410 Effective search space used: 360409410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)