BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2946.p
         (236 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094981|ref|YP_001100056.1| succinate dehydrogenase iron-su...   442   e-125
gi|134096479|ref|YP_001101554.1| fumarate reductase iron-sulfur ...   110   6e-26

>gi|134094981|ref|YP_001100056.1| succinate dehydrogenase
           iron-sulfur subunit [Herminiimonas arsenicoxydans]
          Length = 236

 Score =  442 bits (1136), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 208/236 (88%), Positives = 225/236 (95%)

Query: 1   MTRTLKFKIYRYDPDKDDKPYMQDLTVELKPTDKMLLDALQRIKSDVDDSLALRRSCREG 60
           M RTL+ +IYRYDPDKD KPYMQD+TVEL   DKMLLDALQRIK+DVDD+L+LRRSCREG
Sbjct: 1   MARTLRLQIYRYDPDKDAKPYMQDVTVELHDHDKMLLDALQRIKADVDDTLSLRRSCREG 60

Query: 61  VCGSDAMNINGKNGLACITNLNELTEPIVLKPLPGLPVIRDLIVDMTNFFKQYDSIKPYL 120
           VCGSDAMNINGKNGLAC TNLNELTEPIVL+PLPGLPVIRDLIVDMT FFKQYDSIKP+L
Sbjct: 61  VCGSDAMNINGKNGLACTTNLNELTEPIVLRPLPGLPVIRDLIVDMTQFFKQYDSIKPFL 120

Query: 121 INDSIPPEKERLQSPEQREELDGVYECILCACCSTSCPSFWWNPDRFVGPAGLLQAYRFI 180
           IND+IPPEKERLQ+P +REELDG+YECILCACCSTSCPSFWWNPD+FVGPAGLLQAYRFI
Sbjct: 121 INDTIPPEKERLQTPAEREELDGLYECILCACCSTSCPSFWWNPDKFVGPAGLLQAYRFI 180

Query: 181 ADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAIGKIKELMVRRSV 236
           ADSRDEATGARLDNLEDPYRLFRC +IMNCVDVCPKGLNP +AIGKIKEL+VRR+V
Sbjct: 181 ADSRDEATGARLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTRAIGKIKELLVRRAV 236


>gi|134096479|ref|YP_001101554.1| fumarate reductase iron-sulfur
           protein FrdB [Herminiimonas arsenicoxydans]
          Length = 238

 Score =  110 bits (275), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 12/229 (5%)

Query: 1   MTRTLKFKIYRYDPDKDDKPYMQDLTVEL-KPTDKMLLDALQRIKSDVDDSLALRRSCRE 59
           MT +LK K++R    K D  +   ++ E+ +   + +LD +  I+  +D +L+ R SCR 
Sbjct: 1   MTTSLKVKVWR---GKQDGAF---VSYEVPRRESQTVLDVVTYIQRHLDSTLSYRFSCRV 54

Query: 60  GVCGSDAMNINGKNGLACITNLNELTE--PIVLKPLPGLPVIRDLIVDMTNFFKQYDSIK 117
           G+CGS AM +NG     C T+++++     + + PL  LPV++DL  DM+ FF ++   K
Sbjct: 55  GMCGSCAMTVNGVARWTCRTHVSKVASNGELEIAPLSNLPVVKDLATDMSEFFDKWARGK 114

Query: 118 PYLINDSIPPEKERLQSPEQREEL--DGVYECILCACCSTSCPSFWWNPDRFVGPAGLLQ 175
                     E+     P  +  +      ECI C  C  SC    W P  F+GPA L +
Sbjct: 115 GQFKGTRTRHEEFASVDPASKARVAASAGIECIGCGVCYASCDVVTWRPA-FLGPAALNR 173

Query: 176 AYRFIADSRDEATGARLDNLEDPYRLFRCRSIMNCVDVCPKGLNPNKAI 224
           A+  + D RD     RL  +        C +  +C   CPK + P   I
Sbjct: 174 AWTLVNDVRDANQEERLRAVAGDSGCHACHTQGSCTQRCPKQIAPTAGI 222


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 403,585
Number of extensions: 15483
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 157
Effective length of database: 740,042
Effective search space: 116186594
Effective search space used: 116186594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)