BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2944.p
         (433 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094979|ref|YP_001100054.1| type II citrate synthase [Hermi...   800   0.0  
gi|134096420|ref|YP_001101495.1| methylcitrate synthase [Hermini...   168   4e-43

>gi|134094979|ref|YP_001100054.1| type II citrate synthase
           [Herminiimonas arsenicoxydans]
          Length = 437

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/432 (85%), Positives = 406/432 (93%)

Query: 2   SNTDIKATLSFSDGSPSVDFPIYKGSIGPDVIDIRKLYGATGKFTYDPGFMSTASCNSSI 61
           S +D KATLSFSDGSPS++ PIYKG+IGPDVIDIRKLY A+GKFTYDPGFMSTASCNS+I
Sbjct: 4   SQSDTKATLSFSDGSPSLELPIYKGTIGPDVIDIRKLYAASGKFTYDPGFMSTASCNSTI 63

Query: 62  TYIDGDKGELLYRGYPIEQLAVNCDFLESCYLLLHGELPNAKQKEEFVKTVTEHTMVHEQ 121
           TYIDGDKGELLYRGYPIEQLAV+CDFLE+ YLLL GELPNA QK+EFV TVT HTM+HEQ
Sbjct: 64  TYIDGDKGELLYRGYPIEQLAVHCDFLEASYLLLKGELPNAAQKKEFVATVTRHTMLHEQ 123

Query: 122 MNFFFRGFRRDAHPMAVLTGSVGALSAFYHDSLDISNANHREVSAIRMIAKLPTLVAMAY 181
           M FFFRGFRRDAHPM+VL G+VGALS+FYHDSLDIS+A+HREVSAIR+IAK+PTLVAM+Y
Sbjct: 124 MQFFFRGFRRDAHPMSVLVGTVGALSSFYHDSLDISDAHHREVSAIRLIAKMPTLVAMSY 183

Query: 182 KYSIGQPFVYPRNDLSYTANFMRMMFANPCEEYQVNEVLVRALDRILILHADHEQNASTS 241
           KYS+GQPFVYPRNDLSY+ANFM MMF+ P EEY++N+VLVRALDRILILHADHEQNASTS
Sbjct: 184 KYSVGQPFVYPRNDLSYSANFMHMMFSTPSEEYKINDVLVRALDRILILHADHEQNASTS 243

Query: 242 TVRLAGSSGANPFACIAAGIACLWGPAHGGANEAALNMLEQIGSVDKIPEFITQVKDKNS 301
           TVRL+GSSGANPFACIAAGIACLWGPAHGGANEAALNML++IGSVD IPEF+ +VKDKNS
Sbjct: 244 TVRLSGSSGANPFACIAAGIACLWGPAHGGANEAALNMLKEIGSVDNIPEFLAKVKDKNS 303

Query: 302 GVKLMGFGHRVYKNYDPRAKLMRETCYEVLNELGLHDDPLFKLAMELEKIALEDEYFVSR 361
           G+KLMGFGHRVYKN+DPRAKLMRETC+EVL ELGLHDDPLFKLAM LEK+ALEDEYFVSR
Sbjct: 304 GIKLMGFGHRVYKNFDPRAKLMRETCHEVLEELGLHDDPLFKLAMALEKVALEDEYFVSR 363

Query: 362 KLYPNVDFYSGIVQRALGIPTSMFTCIFAMARTIGWIAQWNEMISDPEQKIGRPRQLFVG 421
           KLYPNVDFYSGIVQ ALGIP S+FT IFAMART+GW+AQWNEMISDPEQKIGRPRQL++G
Sbjct: 364 KLYPNVDFYSGIVQSALGIPVSLFTGIFAMARTVGWVAQWNEMISDPEQKIGRPRQLYIG 423

Query: 422 SPRRDVPPMDKR 433
              RDVP M KR
Sbjct: 424 EKARDVPEMSKR 435


>gi|134096420|ref|YP_001101495.1| methylcitrate synthase
           [Herminiimonas arsenicoxydans]
          Length = 382

 Score =  168 bits (426), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 194/379 (51%), Gaps = 22/379 (5%)

Query: 58  NSSITYIDGDKGELLYRGYPIEQLAVNCDFLESCYLLLHGELPNAKQKEEFVKTVTEHTM 117
           N+++  +     +L YRGY I  +A +C+F E  YLL+HG+LP A + + +   +     
Sbjct: 22  NTALCTVGKTGNDLHYRGYDILDIADSCEFEEIAYLLVHGKLPTAPELKAYKTKLKSMRG 81

Query: 118 VHEQMNFFFRGFRRDAHPMAVLTGSVGALSAFYHDSLDISNANHREVSAIRMIAKLPTLV 177
           +   +          +HPM V+   V  L     +  D +  + R++ A R++A L +++
Sbjct: 82  LPANVKAALEWLPAASHPMDVMRTGVSVLGCMLPEKDDHNAPDARDI-ADRLMASLGSIL 140

Query: 178 AMAYKYS-IGQPFVYPRNDLSYTANFMRMMFANPCEEYQVNEVLVRALDRILILHADHEQ 236
              Y YS  G+      +D S  A+F+ ++        + + +  +A+   LIL+A+HE 
Sbjct: 141 LYWYHYSNHGKRIEVETDDDSIGAHFLHLLHGE-----KPSALWEKAMHTSLILYAEHEF 195

Query: 237 NASTSTVRLAGSSGANPFACIAAGIACLWGPAHGGANEAALNMLEQIGSVDKIPEFITQV 296
           NAST T R+  S+G++ ++ I   I  L GP HGGANE A    ++  S D+    I + 
Sbjct: 196 NASTFTARVIASTGSDMYSAITGAIGALRGPKHGGANEFAFETQKRYESPDEAEADIKR- 254

Query: 297 KDKNSGVKLMGFGHRVYKNYDPRAKLMRETCYEVLNELGLHDDP--LFKLAMELEKIALE 354
           + +N  V ++GFGH VY   DPR K+++    EV   L    D   +F +A  LE +  +
Sbjct: 255 RVENKEV-VIGFGHPVYTIADPRNKVIK----EVARTLSRDADSMKMFDIAERLETVMWD 309

Query: 355 DEYFVSRKLYPNVDFYSGIVQRALGIPTSMFTCIFAMARTIGWIAQWNEMISDPEQKIGR 414
                S+K++ N+D+YS +    +G+PT+MFT +F +ART GW A   E   D   KI R
Sbjct: 310 -----SKKMFANLDWYSAVSYHMMGVPTAMFTPLFVIARTSGWAAHIIEQRID--NKIIR 362

Query: 415 PRQLFVGSPRRDVPPMDKR 433
           P   +VG       P+ +R
Sbjct: 363 PSAHYVGPEDLAFVPLARR 381


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 818,643
Number of extensions: 32870
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 433
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 349
Effective length of database: 723,567
Effective search space: 252524883
Effective search space used: 252524883
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)