BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2943.p
         (954 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094978|ref|YP_001100053.1| 2-oxoglutarate dehydrogenase E1...  1705   0.0  

>gi|134094978|ref|YP_001100053.1| 2-oxoglutarate dehydrogenase E1
           component [Herminiimonas arsenicoxydans]
          Length = 952

 Score = 1705 bits (4415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/952 (83%), Positives = 877/952 (92%), Gaps = 1/952 (0%)

Query: 4   LYEQYNINSYLFGGNAPYIEELYEAYLNNPGSVPDNWRAYFDAVQHVPATDGSTRPDVAH 63
           + +Q   NSYLFGGNAPY+EELYEAYL+NPGSVPDNWRAYFDA+QHVPA DGS++PDVAH
Sbjct: 1   MMQQLLANSYLFGGNAPYVEELYEAYLDNPGSVPDNWRAYFDAMQHVPAVDGSSKPDVAH 60

Query: 64  APVIASFAERAKQGPIRTVIASADSDMGRKRVAVTQLIAGYRDLGSRFANLDPLQRQERP 123
           A VIASFAERAK GPIR V+AS D +MGRKRVAVTQLIA YR LG+ +ANLDPLQRQER 
Sbjct: 61  ASVIASFAERAKHGPIRNVVASEDVEMGRKRVAVTQLIAAYRVLGNNWANLDPLQRQERR 120

Query: 124 NIPELDPSFYGFTDADMDIVFNINNTYFGPETASLRDLLQMLRDTYTRSIGAEFTYISDM 183
           +IP+L+P+FYGFTDADMDIVFNI+NTYFG ETASLRDLL  LRDTY RSIG EF YISD 
Sbjct: 121 SIPQLEPAFYGFTDADMDIVFNISNTYFGTETASLRDLLHALRDTYCRSIGPEFMYISDP 180

Query: 184 SEVRWLEERLEPTRAVPSFSSEKKKHILERLTAAEGLERYLHTKYVGQKRFSLEGGESFI 243
           ++  WL+ER E  R+ P+FSSEKKKHILERL+AAEGLERYLHTKYVGQKRFSLEG ESFI
Sbjct: 181 AQKLWLQERFESIRSTPTFSSEKKKHILERLSAAEGLERYLHTKYVGQKRFSLEGSESFI 240

Query: 244 ASLDETIQRAGEKGVQEIVIGMAHRGRLNVLVNILGKTPQELFSEFEGRHADDLPAGDVK 303
           A+LDE IQR GEKGVQEIVIGMAHRGRLNVLVN LGK PQELF+EFEGRH DDLP+GDVK
Sbjct: 241 AALDEVIQRGGEKGVQEIVIGMAHRGRLNVLVNTLGKMPQELFAEFEGRHGDDLPSGDVK 300

Query: 304 YHQGFSSDVSTPGGPVHLSLAFNPSHLEIVNPVVEGSVKARMDRRGDKDGSQ-VLPILVH 362
           YHQGFSSD+STPGGPVHLSLAFNPSHLEIVNPVVEGSV+AR++RRG  D SQ VLPIL+H
Sbjct: 301 YHQGFSSDISTPGGPVHLSLAFNPSHLEIVNPVVEGSVRARIERRGQNDPSQQVLPILIH 360

Query: 363 GDAAFAGQGVVMETLNLAQTRGYGTGGTVHIVINNQIGFTTSDPRDSRSTLYCSDVVKMI 422
           GDAAFAGQGV+METLNLAQTRGYGTGGTVHI+INNQIGFTTSDPRD+RSTLYC+DV KMI
Sbjct: 361 GDAAFAGQGVIMETLNLAQTRGYGTGGTVHIIINNQIGFTTSDPRDTRSTLYCTDVAKMI 420

Query: 423 EAPVLHVNGDDPEAVVFATQIAVDYRMKFKKDIVVDIICFRKLGHNEQDTPALTQPLMYK 482
           EAPV+HVNGDDPEAVVFA QIA+DYR++F+KDIVVDI+C+RKLGHNEQDTPALTQPLMYK
Sbjct: 421 EAPVIHVNGDDPEAVVFAAQIALDYRLEFRKDIVVDIVCYRKLGHNEQDTPALTQPLMYK 480

Query: 483 KIAQHPGTRKLYADKLVTQQTIPADGGEELVKAYRAAMDAGKHAIDPVLTNFKSKYAVDW 542
           KI+QHPGTRKLYADKL  Q T+  +  +++VKAYR AMDAGKH IDPV++NFKSKYAVDW
Sbjct: 481 KISQHPGTRKLYADKLFAQGTVAENEADDMVKAYRDAMDAGKHTIDPVISNFKSKYAVDW 540

Query: 543 LPFLNRKWTDAAETAVPLAELKRLATKITSVPEGFKVHSLVEKVLNDRAAMGRGEMNLDW 602
           LPFLNRKWTDAA+TAVPL ELKRLA ++T +PE FKVH LVEKVL DRA+MGRGEMNLDW
Sbjct: 541 LPFLNRKWTDAADTAVPLTELKRLAERVTVIPENFKVHPLVEKVLADRASMGRGEMNLDW 600

Query: 603 GMGEHLAYASLVSSGYAVRLTGQDAGRGTFTHRHAVLHDQNRERWDAGTFIPLQNVAENQ 662
           GMGEHLAYASLV+SGYAVRLTGQDAGRGTF HRHAVLHDQNRERWDAG+++PLQN+++ Q
Sbjct: 601 GMGEHLAYASLVASGYAVRLTGQDAGRGTFVHRHAVLHDQNRERWDAGSYVPLQNISDQQ 660

Query: 663 STFTVIDSVLSEEAVLAFEYGYSTAEPNTLTIWEAQFGDFANGAQVVMDQFISSGEVKWG 722
           + F VIDSVLSEEAVLA+EYGYSTAEPNTL IWEAQFGDFANGAQVV+DQFISSGEVKWG
Sbjct: 661 AWFRVIDSVLSEEAVLAYEYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEVKWG 720

Query: 723 RASGLVQMLPHGYEGQGPEHSSARIERYLQLCADNNMQVVQPTTAAQIFHLLRRQMIRLF 782
           R SGLV MLPHGYEGQGPEHSSAR ER+LQLCADNNMQVVQPTTAAQIFHLLRRQMIR F
Sbjct: 721 RVSGLVMMLPHGYEGQGPEHSSARPERFLQLCADNNMQVVQPTTAAQIFHLLRRQMIRKF 780

Query: 783 RKPLIIMTPKSLLRNKDAGSPLSDLAKGSFQTVIPEVDETIDAKKVKRIVACSGKVYYDL 842
           RKPL+I+TPKSLLRNK+AGSPL+DLA GSFQTVI EVD +IDAKKVKR++ACSG+VYYDL
Sbjct: 781 RKPLVILTPKSLLRNKEAGSPLTDLASGSFQTVIGEVDTSIDAKKVKRVIACSGRVYYDL 840

Query: 843 VNARKERGQTDTAIIRVEQLYPFPHKAFAAALKQFPNFNELVWAQDEPQNQGAWLQIQHN 902
           V+ARKER Q D AI+R+EQLYPFPHKAFAA LK+FPNF +LVWAQDEPQNQGAW QIQHN
Sbjct: 841 VHARKERAQNDVAIVRIEQLYPFPHKAFAAELKKFPNFTDLVWAQDEPQNQGAWFQIQHN 900

Query: 903 IFENLSEGQKLAYAGRPASASPAVGYYDKHYAQQKALIETAFAKLKGFVLTK 954
           I EN+S+GQKLAYAGRPASASPAVGYYDKHYAQQK LIETAF+KLKGF+ TK
Sbjct: 901 ILENMSDGQKLAYAGRPASASPAVGYYDKHYAQQKTLIETAFSKLKGFIQTK 952


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,919,277
Number of extensions: 84093
Number of successful extensions: 200
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 1
Length of query: 954
Length of database: 1,000,347
Length adjustment: 91
Effective length of query: 863
Effective length of database: 700,502
Effective search space: 604533226
Effective search space used: 604533226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)