BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2940.p
         (365 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094974|ref|YP_001100049.1| ATPase [Herminiimonas arsenicox...   559   e-161

>gi|134094974|ref|YP_001100049.1| ATPase [Herminiimonas
           arsenicoxydans]
          Length = 365

 Score =  559 bits (1441), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 257/357 (71%), Positives = 304/357 (85%)

Query: 1   MDVRQFYEQSLSQRGYQPDEAQLRAIERLQRAYEEWVAYKAQRASTFKRLISRPAVPRGV 60
           M+V++FY+ +L QRG+  DEAQ +AI RLQ+AY+EWV YKAQRA+ F R +  PA+PRGV
Sbjct: 1   MNVQEFYDHALLQRGFSADEAQRQAIIRLQQAYDEWVEYKAQRANAFLRFLKPPAIPRGV 60

Query: 61  YMWGGVGRGKSFLMDSFYSVVPVVRKTRLHFHEFMRDVHRQLDELKGIADPLDEVAKRIA 120
           YMWGGVGRGKSFLMDSF++VVP+VRKTR+HFHEFMR VHR+LDELK IA+PLDEVA RIA
Sbjct: 61  YMWGGVGRGKSFLMDSFFAVVPLVRKTRVHFHEFMRSVHRELDELKMIANPLDEVALRIA 120

Query: 121 KKYRLICFDEFHVSDIADAMILYNLLKGLFDHGVSFVMTSNYEPSTLYPDGLHRDRMLPT 180
           KKYRLICFDEFHV+DIADAMILYNL   LF +GVSF++TSN+EPSTLYPDGLHRDRMLPT
Sbjct: 121 KKYRLICFDEFHVTDIADAMILYNLFNALFKNGVSFIITSNFEPSTLYPDGLHRDRMLPT 180

Query: 181 IALLKEKLDVMNIDAGIDYRKRVLEQVKVYHTPLNAKTDEELRAAFAAVAEAADEDPRVH 240
           IALL+EKLD+MN+D G DYRKR L QV  YHTPL A  D  LR AF  +AE +DE+P + 
Sbjct: 181 IALLQEKLDIMNVDGGNDYRKRALSQVDAYHTPLGAAADHALRNAFVRIAETSDENPVID 240

Query: 241 IEAREIRALRRAGSAIWFDFATLCGGPRSQNDYLELASRFQTVILSGIPRMSAAMSSEAR 300
           +E R+I+ALRRAG  IWFDFATLCGGPRSQNDYLE+ASRF T+ILS +P MSA MSSEAR
Sbjct: 241 VEGRQIKALRRAGGVIWFDFATLCGGPRSQNDYLEIASRFHTLILSDVPLMSAGMSSEAR 300

Query: 301 RFTWLIDVFYDHKVKLIMSAAVEPDELYTVGTLSNEFHRTVSRIIEMQSKEYLDADR 357
           RF WLIDV YD ++KL+MSAAV+  +LYT G L+ EF RTVSR++EMQS EY++A+R
Sbjct: 301 RFIWLIDVLYDRRIKLLMSAAVDMHQLYTDGALTMEFQRTVSRLVEMQSTEYMEAER 357


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 600,378
Number of extensions: 21997
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 282
Effective length of database: 726,862
Effective search space: 204975084
Effective search space used: 204975084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)