BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2938.p
         (90 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094479|ref|YP_001099554.1| hypothetical protein HEAR1252 [...    98   7e-23

>gi|134094479|ref|YP_001099554.1| hypothetical protein HEAR1252
           [Herminiimonas arsenicoxydans]
          Length = 124

 Score = 98.2 bits (243), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 58/68 (85%)

Query: 23  MTSTHREDIQRRIIELEVEHRDLDSVIDMLMRDARSEDLQLRRLKKRKLQLKDHIALLKM 82
           MT +  + I +RI+ELEVEHRDLD VI+ L+RD R E+LQLRRLKKRKLQLKD+I LL+M
Sbjct: 57  MTISSPQAIHQRIVELEVEHRDLDQVIETLIRDGRHEELQLRRLKKRKLQLKDNITLLRM 116

Query: 83  QLVPDIPA 90
           QLVPDIPA
Sbjct: 117 QLVPDIPA 124


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 121,007
Number of extensions: 2955
Number of successful extensions: 12
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 90
Length of database: 1,000,347
Length adjustment: 59
Effective length of query: 31
Effective length of database: 805,942
Effective search space: 24984202
Effective search space used: 24984202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 121 (51.2 bits)