BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2937.p
         (743 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094480|ref|YP_001099555.1| ATP-dependent helicase [Hermini...  1071   0.0  

>gi|134094480|ref|YP_001099555.1| ATP-dependent helicase
           [Herminiimonas arsenicoxydans]
          Length = 668

 Score = 1071 bits (2769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/669 (78%), Positives = 577/669 (86%), Gaps = 25/669 (3%)

Query: 55  HDAEIDRLFGAGGPLGGAVGSYRPRHAQTEMAKAIATAIANQGTLIAEAGTGTGKTFAYL 114
           HDAEID+LFG   PLG AVG +RPR +QTEMAKAIA AI +Q TLIAEAGTGTGKTFAYL
Sbjct: 14  HDAEIDQLFGVDSPLGHAVGGFRPRQSQTEMAKAIAHAIVHQSTLIAEAGTGTGKTFAYL 73

Query: 115 VPALLWGGKTIVSTGTKTLQDQLYNRDIPTVRNALHAPVSVALLKGRSNYVCHFHLERTL 174
           VP+LLWGGK I+STGTK LQDQL+ RDIPTVR AL APVSVALLKGR+NYVCHFHLERTL
Sbjct: 74  VPSLLWGGKVIISTGTKNLQDQLFLRDIPTVRKALGAPVSVALLKGRANYVCHFHLERTL 133

Query: 175 QNGRLTAREDVGYLREISRFVKSTSSGDKAELTKVPETASVWNLVTSTRDTCFGSECQYY 234
           QNGRLT+R+DVGYLREISRF+K+TSSGDKAEL+KVPETA VWNLVTSTRDTC G+ECQYY
Sbjct: 134 QNGRLTSRDDVGYLREISRFMKTTSSGDKAELSKVPETALVWNLVTSTRDTCMGAECQYY 193

Query: 235 QDCFVMKARKEAQQADVVVVNHHLFFADVALKDTGIAELLPSANTVIFDEAHQLPDTATL 294
           QDCFVMKARKEAQQADVVVVNHHLFFADVALKDTG+AELLPSANT+IFDEAHQLP+TATL
Sbjct: 194 QDCFVMKARKEAQQADVVVVNHHLFFADVALKDTGVAELLPSANTIIFDEAHQLPETATL 253

Query: 295 FFGETISTSQILELCRDVLAEGLSHARDGADWARLVAPVERAARDLRLAFPEESIRLALN 354
           FFG+TISTS +LELCRDVLAEGLSHARDGADWA +V+ VERAARDLRL FP++ +RLA+N
Sbjct: 254 FFGDTISTSNVLELCRDVLAEGLSHARDGADWAGVVSKVERAARDLRLTFPQDIVRLAVN 313

Query: 355 QIAPSAAFFPALDTLKDSMDDMIAVLEKQAERAETIEQCRDRANELLRQLENWGTPEELA 414
           QIAPS+ FFPAL+TLKD +D MI+VL+KQAERAETIEQCR R  E+  +L+ W  P    
Sbjct: 314 QIAPSSLFFPALETLKDELDGMISVLQKQAERAETIEQCRVRGIEIATRLDAWNKP---- 369

Query: 415 KAQPEAASKPTATVGEPSEGEGDESPQKPFYVPWVEAFQSSLQLHRTPLSIAPIFNKQRE 474
                   K    +G+ S             V WVEAF SSLQLH+TPLSIAPIFNKQRE
Sbjct: 370 --------KGEVIIGQES-------------VLWVEAFSSSLQLHQTPLSIAPIFNKQRE 408

Query: 475 GTPRSWIFTSATLAVKKDFNHYAAQMGLWNAPAQSWPSPFNYGEQGILYVPQHLPQPNSF 534
           G PR+WIFTSATLAVK DFNHY+AQMGLW+ PA SWPSPF+Y  QG+LYVP  LPQPNS 
Sbjct: 409 GVPRTWIFTSATLAVKNDFNHYSAQMGLWDEPAHSWPSPFDYDSQGLLYVPTGLPQPNSP 468

Query: 535 EYTDAVIDAALPTIEAAGGRCFFLCTTLRAVNRAAERLRTEFAARGHDFPLFVQGEAGRT 594
           +YTDAVIDAALP IEAAGG  FFLCTT+RAVNR AERLR EF  R   FPL VQGEAGRT
Sbjct: 469 DYTDAVIDAALPVIEAAGGGAFFLCTTIRAVNRTAERLREEFERRKLPFPLMVQGEAGRT 528

Query: 595 ELLDRFRAAGNGVLIGSQSFWEGVDVRGDALSLVIIDKLPFSPPDDPVLAARISEMEKQG 654
           ELLDRFRAAGN VLIGSQSFWEGVDVRGDALS+VIIDKLPFSPPDDPVLAARI  +E++G
Sbjct: 529 ELLDRFRAAGNAVLIGSQSFWEGVDVRGDALSVVIIDKLPFSPPDDPVLAARIEALERKG 588

Query: 655 LNGFVHHQLPAAIINLKQGAGRLIRDEGDRGVLMICDPRIITKNYGRRIWQSLPPFKRTR 714
           +NGF+HHQLPAAIINLKQGAGRLIRDE DRG+LMICDPR+I K YG+RIWQSLPPFKRTR
Sbjct: 589 MNGFMHHQLPAAIINLKQGAGRLIRDETDRGILMICDPRLIAKPYGKRIWQSLPPFKRTR 648

Query: 715 ELEVVQAFF 723
           EL+VV+ F 
Sbjct: 649 ELDVVRTFL 657


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,352,733
Number of extensions: 55687
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 1
Length of query: 743
Length of database: 1,000,347
Length adjustment: 89
Effective length of query: 654
Effective length of database: 707,092
Effective search space: 462438168
Effective search space used: 462438168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)