BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2935.p
         (245 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094481|ref|YP_001099556.1| stationary phase survival prote...   415   e-117

>gi|134094481|ref|YP_001099556.1| stationary phase survival protein
           SurE [Herminiimonas arsenicoxydans]
          Length = 245

 Score =  415 bits (1066), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/245 (80%), Positives = 222/245 (90%)

Query: 1   MKILISNDDGYLAPGIIALAEALAPIADITVVAPDSNRSGSSNSLTLDRPLWVEQAANGF 60
           MKILISNDDGYLAPG+IALA+ALAPIADI VVAPDSNRSGSSNSLTLDRPL V QA+NGF
Sbjct: 1   MKILISNDDGYLAPGLIALADALAPIADIVVVAPDSNRSGSSNSLTLDRPLSVYQASNGF 60

Query: 61  YYLNGTPSDCVHVALTGLLQERPDLIVSGINQGQNMGDDTLYSGTVAAATEGFLFGIPSI 120
           Y++NGTPSDCVH+ALTG++  RPDLIVSGINQGQNMGDDTLYSGTVAAATEG LFGIP+I
Sbjct: 61  YFINGTPSDCVHIALTGIMSFRPDLIVSGINQGQNMGDDTLYSGTVAAATEGHLFGIPAI 120

Query: 121 AFSQLHKGWAELKSAARIAREVVERRFDSLPKPYLLNVNIPNLPYEEIKGSLATRLGKRH 180
           AFSQL KGWAELKSAAR+AR++VERRF++LP+ +LLNVNIPNLPYE++K ++ATRLG+RH
Sbjct: 121 AFSQLEKGWAELKSAARVARDIVERRFETLPENFLLNVNIPNLPYEQLKPAVATRLGRRH 180

Query: 181 MSEPVHKLTDPHGRDLYWIGPAGAAKDGGEGTDFHATANGYVSITPLQIDLTHTAQLDNL 240
            SE V K  DPHGRD+YWIGP+G  KD GEGTDFHATA G+VSITPLQIDLT  AQL  L
Sbjct: 181 QSEAVIKAQDPHGRDIYWIGPSGGQKDAGEGTDFHATAQGHVSITPLQIDLTQNAQLAAL 240

Query: 241 KKALA 245
           KK LA
Sbjct: 241 KKVLA 245


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 459,566
Number of extensions: 18730
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 166
Effective length of database: 740,042
Effective search space: 122846972
Effective search space used: 122846972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)