BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2934.p
         (321 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094482|ref|YP_001099557.1| putative L-isoaspartate O-methy...   384   e-108
gi|134095875|ref|YP_001100950.1| protein-L-isoaspartate O-methyl...    82   3e-17

>gi|134094482|ref|YP_001099557.1| putative L-isoaspartate
           O-methyltransferase [Herminiimonas arsenicoxydans]
          Length = 288

 Score =  384 bits (986), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/324 (63%), Positives = 235/324 (72%), Gaps = 40/324 (12%)

Query: 1   MSDKPSRFPLSLSSVVDKKKTANAGRD---VPGRPQATTQTAAKNAAQSSQRAALKPVQQ 57
           M+DK  RFPLSLSS+ +K     A  D   V G+  AT QTA  NA++   +A + P QQ
Sbjct: 1   MTDKAKRFPLSLSSLSEKAPRNGARSDPQHVAGK-TATPQTATLNASRHG-KAPVVPRQQ 58

Query: 58  GLAQALRPPPAPPRAPLAPAQPLLSAAPVPRTAVKNVMTVTQTNASHHASPLASEAVRKA 117
            +   +  P AP                                    ++ L S+A+RKA
Sbjct: 59  DVPHKIAAPTAP-----------------------------------RSASLVSDAIRKA 83

Query: 118 MVARVAKQGVADAKVLAALEAVPRHMFVEPGLASQAYIDASLPIGHHQTISQPYIVARMI 177
           M ARVAKQGV D+KVLAA+EAVPRH+F+EP LASQAYIDASLPIG+HQTISQPYIVARMI
Sbjct: 84  MTARVAKQGVTDSKVLAAMEAVPRHLFMEPALASQAYIDASLPIGYHQTISQPYIVARMI 143

Query: 178 ELMRQNRHGGRLERVLEIGTGCGYQAAVLSRVAGEVYSIERIKPLHELAKTNLRPLRVAN 237
           E+MR N + G L  VLEIGTGCGYQAAVLS VA EVYSIERIK LHELAK+NLRP+RVAN
Sbjct: 144 EVMRNNSNAGVLNCVLEIGTGCGYQAAVLSLVAKEVYSIERIKGLHELAKSNLRPMRVAN 203

Query: 238 IRLHYGDGMLGLPQVAPFDGIILAAAGLEVPQALLEQLAIGGRLVAPVGERQQVLELIER 297
           IRLHYGDGMLGLPQ APFDGIILAAAGLEVPQALLEQL IGGRLVAPVG+R QVL+LIER
Sbjct: 204 IRLHYGDGMLGLPQAAPFDGIILAAAGLEVPQALLEQLTIGGRLVAPVGDRHQVLQLIER 263

Query: 298 VGQRDWRRTTLEQCHFVPLRPGTV 321
           V + +W+ +TLE CHFVPLRPGTV
Sbjct: 264 VSKFEWKSSTLEDCHFVPLRPGTV 287


>gi|134095875|ref|YP_001100950.1| protein-L-isoaspartate
           O-methyltransferase [Herminiimonas arsenicoxydans]
          Length = 218

 Score = 82.4 bits (202), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 6/193 (3%)

Query: 127 VADAKVLAALEAVPRHMFVEPGLASQAYIDASLPIGHHQTISQPYIVARMIELMRQNRHG 186
           V D  VL  L  V R  FV     + A+ D+ +P+ H + +  P + AR+++ +   +H 
Sbjct: 20  VLDQDVLELLVIVKREAFVPLAYRALAFADSEIPLPHGEHMMTPKLEARILQELALKKH- 78

Query: 187 GRLERVLEIGTGCGYQAAVLSRVAGEVYSIERIKPLHELAKTNLRPLRVANIRLHYGDGM 246
              E VLEIG G GY AA+L+  A  V ++E    L  LA+ NL    V+N+ +   DG 
Sbjct: 79  ---ENVLEIGAGSGYMAALLAYKARHVTTLEIEPELKALAQQNLANYGVSNVDVVEADGA 135

Query: 247 LGLPQV-APFDGIILAAAGLEVPQALLEQLAIGGRLVAPVGER-QQVLELIERVGQRDWR 304
            G       +D I+++ +   VP+ LL Q+ +GGR+   VG+      ++I RV    + 
Sbjct: 136 QGYTAANTTYDVIVVSGSLPIVPETLLAQIKVGGRMFVIVGDAPVMTAQIITRVSDISYN 195

Query: 305 RTTLEQCHFVPLR 317
              L +    PLR
Sbjct: 196 TVNLFETVVKPLR 208


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.132    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 500,279
Number of extensions: 18456
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 321
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 239
Effective length of database: 730,157
Effective search space: 174507523
Effective search space used: 174507523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)