BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2933.p
         (321 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094483|ref|YP_001099558.1| lipoprotein precursor [Herminii...   372   e-104
gi|134096132|ref|YP_001101207.1| protease [Herminiimonas arsenic...    70   1e-13
gi|134095961|ref|YP_001101036.1| putative metalloendopeptidase [...    69   4e-13
gi|134093530|ref|YP_001098605.1| putative endopeptidase [Hermini...    57   1e-09

>gi|134094483|ref|YP_001099558.1| lipoprotein precursor
           [Herminiimonas arsenicoxydans]
          Length = 304

 Score =  372 bits (954), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/326 (60%), Positives = 235/326 (72%), Gaps = 27/326 (8%)

Query: 1   MKKIRLAVLCSVVSLLAACGSTPNQQPAPVVERTTSTVKPVDTAAAPAAPVPSGRGYYTV 60
           MKK R+ +L  +V  LAACG+T   + APV ERT          A+ A      R +YTV
Sbjct: 1   MKKFRITLLVLLVGSLAACGTT--HRAAPVTERTIG-------GASTAKNTADDRNFYTV 51

Query: 61  KKGDTLYRIALDVGQNWRDIVAWNNLTNPNDIKVDQVLRVAPPD----RVGPAQTAAVVA 116
           KKGDTLYRIALD GQ++ ++V WN L NPNDIKVDQVLRVAPPD    R G AQT AV  
Sbjct: 52  KKGDTLYRIALDFGQSYSELVTWNKLANPNDIKVDQVLRVAPPDAPAARSGGAQTGAVAT 111

Query: 117 TPGAGLDVKPLGAPGAAAPAAAPMASGNNKTGPRGDKRAYSESALAELEKPDAAAAPAPA 176
             G+G + +PL AP A+        +  NKT PRG+KR YS+S LA+++KP+ AA   P 
Sbjct: 112 --GSGAEARPLSAPAAS--------TAGNKTSPRGEKRPYSDSTLADMQKPEGAAVTTP- 160

Query: 177 AKPEPSHAAEKPAAASQPAASG-EDEGVSWMWPAEGKVVGTFEGGKKGVDIAGKDGQAVL 235
             P+   +++KPA     AA+G E E VSWMWPAEGK+V TF+  KKG+DIAGK GQ VL
Sbjct: 161 --PKAVASSDKPAEIPAAAATGAEYETVSWMWPAEGKLVATFDDNKKGIDIAGKSGQQVL 218

Query: 236 AAASGKVMYAGSGIRGYGNLVIIKHTNNLLSAYAHNKTILVKEGQSVTKGQKIAEMGKSD 295
           AA +GKVMYAGSGIRGYGNLVI+KHT+ LLSAYAHNK I VKEGQSV+KGQKIA+MG SD
Sbjct: 219 AAGAGKVMYAGSGIRGYGNLVIVKHTSTLLSAYAHNKIIHVKEGQSVSKGQKIADMGDSD 278

Query: 296 SDSVKLHFEIRQQGKPVDPSKYLPPR 321
           +DSVKLHFEIRQQGKPVDPSK+LP R
Sbjct: 279 ADSVKLHFEIRQQGKPVDPSKFLPSR 304


>gi|134096132|ref|YP_001101207.1| protease [Herminiimonas
           arsenicoxydans]
          Length = 452

 Score = 70.5 bits (171), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 10/122 (8%)

Query: 208 PAEGKVVGTFEGGK-------KGVDIAGKDGQAVLAAASGKVMYAGSGIRGYGNLVIIKH 260
           P  G ++  F G K       KG+ I   +G  V A A+G+V++A   +RG+GNL+I+ H
Sbjct: 333 PIRGDLIAKF-GSKRGDGPSWKGLFIRANEGTEVKAIAAGRVIFA-EWLRGFGNLIIVDH 390

Query: 261 TNNLLSAYAHNKTILVKEGQSVTKGQKIAEMGKS-DSDSVKLHFEIRQQGKPVDPSKYLP 319
            +  ++ Y +N+++L   G +V  G  IA  G S  ++   L+FE+R QG+  DP  ++ 
Sbjct: 391 GSQYMTIYGNNQSVLKHAGDAVKAGDVIASTGNSGGNEQSGLYFEMRHQGRAFDPLGWVT 450

Query: 320 PR 321
            R
Sbjct: 451 IR 452


>gi|134095961|ref|YP_001101036.1| putative metalloendopeptidase
           [Herminiimonas arsenicoxydans]
          Length = 233

 Score = 68.6 bits (166), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 5/120 (4%)

Query: 203 VSWMWPAEGKVVGTFEGG---KKGVDIAGKDGQAVLAAASGKVMYAGSGIRGYGNLVIIK 259
           VS+     G+ +  F G     +G+D A   G  + AAA G V  A    + YGN++ I 
Sbjct: 103 VSYNASTFGRRLDPFSGRSAMHEGIDFAAPIGTPIRAAAGGVVTVAEFHPQ-YGNMMEID 161

Query: 260 HTNNLLSAYAHNKTILVKEGQSVTKGQKIAEMGKS-DSDSVKLHFEIRQQGKPVDPSKYL 318
           H N++++ YAH   +L++ G  V +GQ IA++G +  S    LHFE+R +G   DP K+L
Sbjct: 162 HGNDMITRYAHTSRLLMQVGDIVRRGQHIADIGTTGRSTGPHLHFEVRIKGVAQDPHKFL 221


>gi|134093530|ref|YP_001098605.1| putative endopeptidase
           [Herminiimonas arsenicoxydans]
          Length = 456

 Score = 57.0 bits (136), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 222 KGVDIAGKDGQAVLAAASGKVMYAGSGIRGYGNLVIIKHTNNLLSAYAHNKTIL--VKEG 279
           KGVD A   G  + A+  G + +AG+   GYGN+V+IKH +   +AYAH       +++G
Sbjct: 317 KGVDFAAATGTPIRASGDGVIDFAGTQ-GGYGNVVVIKHWSKYSTAYAHMSRFAPNMRKG 375

Query: 280 QSVTKGQKIAEMGKSD-SDSVKLHFEIRQQGKPVDP 314
             V++GQ I  +G +  S    LH+E R   +  DP
Sbjct: 376 TKVSQGQVIGYVGTTGWSTGPHLHYEFRVNNEARDP 411


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.310    0.128    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 510,873
Number of extensions: 19630
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 4
Length of query: 321
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 239
Effective length of database: 730,157
Effective search space: 174507523
Effective search space used: 174507523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)