BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2931.p
         (453 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094485|ref|YP_001099560.1| 23S rRNA 5-methyluridine methyl...   699   0.0  

>gi|134094485|ref|YP_001099560.1| 23S rRNA 5-methyluridine
           methyltransferase [Herminiimonas arsenicoxydans]
          Length = 461

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/451 (73%), Positives = 380/451 (84%), Gaps = 1/451 (0%)

Query: 3   QDIIIEIKSLDMDGRGVGHLENEDGTQGKVIFVEGALPGERVSFASYRKKPKWEAGVMTT 62
           Q  II+I+SLDM+ RGVGHL+NEDGTQGKVIFVEGALP ERV ++SYRKK  WEA  M  
Sbjct: 2   QQTIIDIESLDMEARGVGHLQNEDGTQGKVIFVEGALPKERVVYSSYRKKANWEAAKMMV 61

Query: 63  LHHESSLRVKPKCDYFGTCGGCAMQHLEPSAQVAMKQRVLEDNLWHLGKTKAEVMLRPIY 122
           L  ESSLRV+PKC YFG CGGC+MQHLEP+AQVAMKQR+LEDNL H+GK KAE MLRPI+
Sbjct: 62  LLKESSLRVQPKCAYFGICGGCSMQHLEPTAQVAMKQRILEDNLKHIGKVKAETMLRPIH 121

Query: 123 GPTWGYRYRARISVRHVAKKGGVLVGFHEKRSSFIADMKTCEILPPNVSAMLVPLRELVA 182
           GPTWGYRYRARISVR+V KKGGVLVGFHE++SSFI DMKTCEILP NVSAMLVPLR L+ 
Sbjct: 122 GPTWGYRYRARISVRNVPKKGGVLVGFHERKSSFITDMKTCEILPANVSAMLVPLRHLIG 181

Query: 183 ALSIRDRMPQIELAVGEGDDGSKVTVLVLRIMESLSPADEALLKSFADERKIEWWLQTKG 242
           +LSI D +PQIELA+G+G+   K+T LVLRIM  LS  D+  LK+FADE K++WWLQ  G
Sbjct: 182 SLSIIDHLPQIELAIGQGEQ-DKITALVLRIMAPLSAEDDVKLKAFADEYKVQWWLQPAG 240

Query: 243 PDTAAPYYPAESRLQYTLPEFGIRMPFKPTDFTQVNHQINRVLVARALRLLDVQPQDRVA 302
           PD+A  +YP +  L Y+LPEFGI+MPFKPTDFTQVNHQINRVLVARALRLLD Q  DR+A
Sbjct: 241 PDSAYQFYPEDENLHYSLPEFGIKMPFKPTDFTQVNHQINRVLVARALRLLDAQATDRIA 300

Query: 303 DLFCGLGNFTLPIATLAREVVGIEGSTALTERALENAKVNGVDAKTSFYCRNLFEAKSED 362
           DLFCGLGNFTLPIAT A EVVGIEGST LTERALENA  NG+  KT+FY RNLFEAK++D
Sbjct: 301 DLFCGLGNFTLPIATQAGEVVGIEGSTTLTERALENAVANGLAGKTAFYSRNLFEAKTDD 360

Query: 363 FVALGKFDRMLIDPPREGAMEVCKALVELLPEQQHLKPRRIVYVSCNPATLARDAGMLVH 422
           F+ALGKFDRMLIDPPR+GA+ VC+AL  L   +  L P RIVYVSCNP+TLARDA +LV+
Sbjct: 361 FIALGKFDRMLIDPPRDGALAVCEALAGLNAVRPDLLPSRIVYVSCNPSTLARDAAVLVN 420

Query: 423 LGGYALKYAGVVNMFPHTAHVESIAVFDLPQ 453
            G Y LK AGVVNMFPHT+HVES+AVF+L +
Sbjct: 421 EGPYVLKNAGVVNMFPHTSHVESMAVFELKE 451


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 859,349
Number of extensions: 34628
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 368
Effective length of database: 720,272
Effective search space: 265060096
Effective search space used: 265060096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)