BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2927.p
         (407 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094488|ref|YP_001099563.1| hypothetical protein HEAR1261 [...   707   0.0  

>gi|134094488|ref|YP_001099563.1| hypothetical protein HEAR1261
           [Herminiimonas arsenicoxydans]
          Length = 386

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/376 (87%), Positives = 358/376 (95%), Gaps = 4/376 (1%)

Query: 30  PAQLVAYCGELGEKPFRAKQLQRWIHQFGVADFDQMTDLAKSLRDKLKTRAEVRAPAIIS 89
           PAQL+AYCGELGEKPFRAKQLQRWIHQFG +DFD MTDLAKSLRDKLKTRA + APA+IS
Sbjct: 13  PAQLIAYCGELGEKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLKTRAMIAAPAVIS 72

Query: 90  DHTSTDGTRKWLVDVGQGNAVETVFIPEENRGTLCVSTQAGCAVNCRFCSTGKQGFNRNL 149
           DHTS+DGTRKWL+DVGQGNAVETVFIPEENRGTLC+STQAGCAVNCRFCSTGKQGFNRNL
Sbjct: 73  DHTSSDGTRKWLIDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTGKQGFNRNL 132

Query: 150 TVAEIIGQLWMAEFELRKTKGIEGGPKGERQITNVVMMGMGEPLLNFEPTVTALRLMLDD 209
           +V EIIGQLWMAEFELR+TKGIE GPKGERQITNVVMMGMGEPLLN+EPTVTAL+LMLDD
Sbjct: 133 SVGEIIGQLWMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNYEPTVTALKLMLDD 192

Query: 210 NAYGLSRRRVTLSTSGVVPMIDKLSQECPVALAVSLHASNDALRDSLIPLNRKHPLRELM 269
           NAYGLSRRRVTLSTSGVVPMIDKLSQ+C VALAVSLHASNDALRD L+PLN+K+PL+ELM
Sbjct: 193 NAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPLNKKYPLQELM 252

Query: 270 LACKRYLEFAPRDFITFEYCMLDGVNDTDTHARELVALVKEGETAIPCKFNLIPFNPFPE 329
            ACKRYLEFAPRDF+TFEYCMLDGVND+D HAREL+ LV++    +PCKFNLIPFNPFPE
Sbjct: 253 AACKRYLEFAPRDFVTFEYCMLDGVNDSDQHARELLTLVRD----VPCKFNLIPFNPFPE 308

Query: 330 SGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEVKDRTRVQERMQKMA 389
           SGL RS+NPRIKAFAQ+LMD G+VTTIRKTRGDDIDAACGQLAGEV+DRTRVQ+RM+KMA
Sbjct: 309 SGLTRSNNPRIKAFAQVLMDGGLVTTIRKTRGDDIDAACGQLAGEVQDRTRVQDRMKKMA 368

Query: 390 EYQSKFGKDFGRIVEI 405
           EYQ KFGK+FGRIVEI
Sbjct: 369 EYQEKFGKNFGRIVEI 384


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 757,069
Number of extensions: 30953
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 323
Effective length of database: 723,567
Effective search space: 233712141
Effective search space used: 233712141
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)