BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2926.p
         (357 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094490|ref|YP_001099565.1| hypothetical protein HEAR1263 [...   201   6e-53

>gi|134094490|ref|YP_001099565.1| hypothetical protein HEAR1263
           [Herminiimonas arsenicoxydans]
          Length = 352

 Score =  201 bits (510), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 147/344 (42%), Positives = 198/344 (57%), Gaps = 35/344 (10%)

Query: 28  GAMLASARQKKGWSVEQVASLVKLAPRQIQAIEADNYAALPGLAVARGFVRSYAKVLGLD 87
           G  LA+ R+ +GW+  Q+AS + LA RQIQA+EADNYAALPG+ + RGF+RSYAKVL  D
Sbjct: 30  GTQLAALREARGWTTVQIASQLNLANRQIQALEADNYAALPGMVIVRGFIRSYAKVLQTD 89

Query: 88  AHALAAAMPQETAVQQRDHIVPQ-HSLSTPFSEGPL-PAMMMSTRGNSS--VLPILAGVV 143
              + AA+  +T V     ++P+ ++LS  FSE  L P+    +RG SS  V+ +LA +V
Sbjct: 90  PAPILAAVIDDTVVPP--VLLPERNTLSASFSETRLSPS---GSRGLSSKTVMGVLALLV 144

Query: 144 VVAVLAGAAAVRWTELGAN-VPQLAWLKAHHSETS--------AAPETTEATQGV-EVAS 193
           +  +L  A  + W   G + V   A  K+  +E++           E  EAT G  E   
Sbjct: 145 IGVLLFAALRMGWLPGGVSAVSSTAEEKSIPTESAEEAVEVPATQTEAVEATSGANEPVQ 204

Query: 194 NDTPVNARVETITPPPAEASATQAAPAPEAPAPVAAQPAPTLAAAPAASEPASTASPAAV 253
              P  AR   +TP PA A+  +   AP  PAPV A P PT         P S  +PA +
Sbjct: 205 PAVPEAARPPAVTPAPAVAT-VKPVTAPHVPAPVLA-PTPT---------PVSVTAPAGL 253

Query: 254 APTSPAASSTSMASTTVPSGLNIVNSKDLLRLTFREDSWVEIRRADKSTIISRLLKAGTT 313
              +P AS  ++    VP     V+SKD L +  REDSWVEI+RAD S ++SRLLKAG+ 
Sbjct: 254 PVAAPQASKVAIPVAAVP-----VDSKDALAIKVREDSWVEIKRADNSIVLSRLLKAGSA 308

Query: 314 ETFDVSDATTLIIGNAAGVDATLRGQPLDLKTPGGSNVARLNLN 357
           E  +VS   +++IGNAAGVD TLRG P+D+     SNVARLNL 
Sbjct: 309 EVVEVSGPVSMVIGNAAGVDVTLRGAPIDVVAGNTSNVARLNLK 352


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.310    0.122    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 467,255
Number of extensions: 15329
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 274
Effective length of database: 726,862
Effective search space: 199160188
Effective search space used: 199160188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)