BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2925.p
         (420 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094491|ref|YP_001099566.1| 4-hydroxy-3-methylbut-2-en-1-yl...   742   0.0  

>gi|134094491|ref|YP_001099566.1| 4-hydroxy-3-methylbut-2-en-1-yl
           diphosphate synthase [Herminiimonas arsenicoxydans]
          Length = 425

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/415 (85%), Positives = 386/415 (93%)

Query: 2   SSSPIASGPLARRNSRRVVISHGAREIIVGGGAPVMVQSMTNTDTADAIGTAIQIKDLAR 61
           SS PIA+GP +RR SR  V+S+G RE+ +GG APV+VQSMTNTDTAD IGTAIQIK+LAR
Sbjct: 3   SSDPIATGPFSRRKSRIAVVSYGGREVRIGGDAPVVVQSMTNTDTADVIGTAIQIKELAR 62

Query: 62  AGSEVVRLTVNTPEAAAAVPAIREQLDRMGVDVPLVGDFHYNGHTLLTEYPECAQALSKY 121
           AGSE+VR+TVNTPEAAAAVPAI EQLD+M V VPLVGDFHYNGHTLL +YP+CA+AL+KY
Sbjct: 63  AGSEMVRITVNTPEAAAAVPAICEQLDKMDVVVPLVGDFHYNGHTLLNDYPDCAKALAKY 122

Query: 122 RINPGNVGKGAKRDTQFAQMIEVACKYDKPVRIGVNWGSLDQALLARIMDENAGRAEPWA 181
           RINPGNVGKG KRDTQFAQMIE AC++DKPVRIGVNWGSLDQ LLARIMDENA RA PW 
Sbjct: 123 RINPGNVGKGNKRDTQFAQMIETACRFDKPVRIGVNWGSLDQELLARIMDENAARAHPWT 182

Query: 182 AQAVMYEALVTSAIENAQRAEELGMAGDKIILSCKVSGVQDLIAVYRELARRCDYPLHLG 241
           AQAVMYEALVTSAIENA RAEE+G+AGD+IILSCKVSGVQDLIAVYRELARRCDYPLHLG
Sbjct: 183 AQAVMYEALVTSAIENAMRAEEVGLAGDRIILSCKVSGVQDLIAVYRELARRCDYPLHLG 242

Query: 242 LTEAGMGSKGIVASTAALSVLLQEGIGDTIRISLTPEPGGDRTKEVVVGQEILQTMGLRK 301
           LTEAGMGSKGIVASTAALSVLLQEGIGDTIRISLTPEPGGDRT+EV+VGQEILQTMGLRK
Sbjct: 243 LTEAGMGSKGIVASTAALSVLLQEGIGDTIRISLTPEPGGDRTREVIVGQEILQTMGLRK 302

Query: 302 FTPMVIACPGCGRTTSTVFQDLADKIQTFLREQMPVWKGKYPGVEAMNVAVMGCIVNGPG 361
           FTPMVIACPGCGRTTSTVFQ+LAD IQT+LR+QMPVWK +YPGVEAMNVAVMGCIVNGPG
Sbjct: 303 FTPMVIACPGCGRTTSTVFQELADGIQTYLRDQMPVWKKQYPGVEAMNVAVMGCIVNGPG 362

Query: 362 ESKHANIGISLPGTGESPAAPVFIDGEKKMTLRGERIAEEFQNVVLEYVQSHYGQ 416
           ESKHANIGISLPGTGESPAAPVF+DG K +TLRG+ IA EF  +VL+YV+S YG+
Sbjct: 363 ESKHANIGISLPGTGESPAAPVFVDGVKTVTLRGDNIAAEFHAIVLDYVKSRYGK 417


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 820,453
Number of extensions: 35371
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 336
Effective length of database: 723,567
Effective search space: 243118512
Effective search space used: 243118512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)