BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2924.p
         (453 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094492|ref|YP_001099567.1| histidine tRNA synthetase [Herm...   791   0.0  

>gi|134094492|ref|YP_001099567.1| histidine tRNA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 448

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/438 (85%), Positives = 404/438 (92%), Gaps = 5/438 (1%)

Query: 1   MSEQKKVEKIVGVKGMNDILPADAPLWELFENTVQSVLKSYGFQQIRTPIVEPTALFARG 60
           MS+ KK EKIVGVKGMNDILPADAPLWELFENTV +VLKSYGFQQIRTPIVEPTALFARG
Sbjct: 1   MSDTKKTEKIVGVKGMNDILPADAPLWELFENTVHTVLKSYGFQQIRTPIVEPTALFARG 60

Query: 61  LGEVTDIVEKEMYSFTDSMNGDNLTLRPENTAGVVRAALEHNLTYDGPKRLWYVGPMFRH 120
           LG VTDIVEKEMYSFTDSMNGD LTLRPE TA VVRAALEHNLTYDGPKRLWY GPMFRH
Sbjct: 61  LGAVTDIVEKEMYSFTDSMNGDELTLRPECTASVVRAALEHNLTYDGPKRLWYSGPMFRH 120

Query: 121 ERPQRGRYRQFHQVGAEAVGFSGPDIDAELIMMCQRLWDDLGLSDIRLELNSIGNAEERN 180
           ERPQRGRYRQFHQ+GAEA+GFSGPDIDAELIMMCQRLWDDLGL D+RLELNSIGNAEERN
Sbjct: 121 ERPQRGRYRQFHQIGAEAIGFSGPDIDAELIMMCQRLWDDLGLQDVRLELNSIGNAEERN 180

Query: 181 KHRADLIAYFEQHKELLDTDAQRRLHANPLRILDTKNPSMQEMVNAAPKLLDYLGEESRA 240
           KHRADLI+YFEQH ELLD +AQ+RLH+NPLRILDTKNP+MQEMVNAAPKLLDYLGE+SRA
Sbjct: 181 KHRADLISYFEQHAELLDAEAQKRLHSNPLRILDTKNPAMQEMVNAAPKLLDYLGEDSRA 240

Query: 241 HFEGVQKILRHNNIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLIEMF 300
           HFEGVQKIL HN IPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPL+EMF
Sbjct: 241 HFEGVQKILNHNAIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGGRYDPLVEMF 300

Query: 301 GGKPTPACGFAMGVERLLELMKANGEQYAPNQCDVYLVHQGEDAQLQSFVLAERLRTAGL 360
           GGKPTPACGFAMGVERLLELMKA+GE++ PNQCDVY+VHQGE AQLQ+ V+AERLR AGL
Sbjct: 301 GGKPTPACGFAMGVERLLELMKASGEKFTPNQCDVYIVHQGEPAQLQASVVAERLRDAGL 360

Query: 361 DVVLHCASSNGGGSFKAQMKRADASGAAFAVIIGEDELKAATATVKHLREGNAEEGRANQ 420
           DVVLHCA+S G GSFK+QMKRAD SGAA+AVIIGEDE+    A VK +R+    EG+  Q
Sbjct: 361 DVVLHCAASAGIGSFKSQMKRADNSGAAYAVIIGEDEIAKGAAVVKEMRDA---EGK--Q 415

Query: 421 SNMAFDGVVDYIVEQIVG 438
           S +AF+G+ DY+V+QIVG
Sbjct: 416 SEVAFEGIADYLVDQIVG 433


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 878,676
Number of extensions: 38091
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 368
Effective length of database: 720,272
Effective search space: 265060096
Effective search space used: 265060096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)