BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2923.p
         (214 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094493|ref|YP_001099568.1| hypothetical protein HEAR1266 [...   270   3e-74

>gi|134094493|ref|YP_001099568.1| hypothetical protein HEAR1266
           [Herminiimonas arsenicoxydans]
          Length = 216

 Score =  270 bits (691), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 142/213 (66%), Positives = 172/213 (80%)

Query: 1   MAYDLEEQEQLDSIKAWWAKYGNLVTWALIIALAGYAAWTGWNTYQGRQSAQASVLYEEQ 60
           MAYD  EQEQL S+K+WW +YGNL+TW LII L  YAAW  W  YQ +Q+ QA+ LYEE 
Sbjct: 1   MAYDHAEQEQLASLKSWWKQYGNLITWLLIIVLGAYAAWAAWGAYQNKQANQAAQLYEEL 60

Query: 61  QKALAAKDNAKVQRAATDIQDKFSGTAYAEMSALVAAKSAFDANDNETAKKQLQWVIDHG 120
           QKA+ A+D  +VQR A D++ KF GTAYA+M+AL AAKSAFDAND +TAK QLQWVID G
Sbjct: 61  QKAVTAQDKDQVQRVAADMEGKFPGTAYAQMTALAAAKSAFDANDFKTAKAQLQWVIDKG 120

Query: 121 RGKEYKAIAAVRLAGVLLDTKSYEEALKVLAGDYPAQFAGAIADRKGDVLLAQGKRDEAR 180
              +YKAIA++RLAG+LLD K+Y+E LK+L+  +PAQFAG + DRKGD+L+AQ K DEAR
Sbjct: 121 VSDDYKAIASIRLAGILLDEKAYDEGLKLLSASFPAQFAGVVEDRKGDILMAQNKLDEAR 180

Query: 181 TAYKLALEKSDAKDPGRQLIQIKLDAIGGEAPK 213
           TAY+ ALEK+DAK+PGRQLIQIKLDAIGG A K
Sbjct: 181 TAYQAALEKTDAKNPGRQLIQIKLDAIGGGAAK 213


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.127    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 405,298
Number of extensions: 15428
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 136
Effective length of database: 743,337
Effective search space: 101093832
Effective search space used: 101093832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 127 (53.5 bits)