BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2922.p
         (399 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094494|ref|YP_001099569.1| serine/threonine protein kinase...   419   e-118

>gi|134094494|ref|YP_001099569.1| serine/threonine protein kinase
           [Herminiimonas arsenicoxydans]
          Length = 389

 Score =  419 bits (1076), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/374 (55%), Positives = 262/374 (70%), Gaps = 8/374 (2%)

Query: 33  VVALSGCSLFSS-------KKDPNPPAPLVEFTQKMRAQSAWTVSVGKAGSYQFSPAFAS 85
           +VA +GCS  SS           N PA LVE       ++ W+  VGKA  Y F+PA   
Sbjct: 17  LVATTGCSFMSSLNPFASKPSTRNQPAALVEVKTTATVRTVWSERVGKADQYVFTPAVVG 76

Query: 86  GSIFAAANDGTVVRINAQNGQTLWRSRAEGDLTAGVGTDGSTVVVVGEKGRIQAFDAASG 145
           G +F AA DGTV+RINA  G+++W   A   LTAGVG+DG T+VV GEKG + AFD  +G
Sbjct: 77  GDVFTAAADGTVMRINAATGRSVWSINAGSKLTAGVGSDGDTIVVAGEKGTVLAFDG-NG 135

Query: 146 KPTWTAQAPSEVLSAPAVGEGLVVIRSIDNRVTAYDADSGSQRWMVQRNLPSLTLRNAPG 205
           K  W AQA SEVLS PAVG+G+V++RS+DNRV A DA++G+++W VQR  P+LTLR +PG
Sbjct: 136 KQRWKAQASSEVLSTPAVGQGVVIVRSLDNRVVALDAETGARKWFVQRTTPALTLRTSPG 195

Query: 206 IAIGAQTAFVALPGGRLSALALNNGGPRWEIPVGDPRGTTELERISDVSGMPALGATDIC 265
           I I    A+V L GGRL A+ LNNG PRWEI VGDPRGTTELERI+D+SG P +   D+C
Sbjct: 196 ITIANSNAYVGLAGGRLLAVTLNNGAPRWEIAVGDPRGTTELERIADISGAPVVSGRDVC 255

Query: 266 AASYQGRIGCFDLLNGNVRWLKEFSSDVGVNLDDAYVYAADVGGTVTEFARDTGAVIWRN 325
           A +YQGR+ CFD ++G  RW K  SSDVGV +D+ +VYAAD  G +  F RD G   WRN
Sbjct: 256 AVAYQGRVACFDAISGTPRWAKALSSDVGVAVDERFVYAADERGALNAFERDGGVSAWRN 315

Query: 326 DRLKNRVLSAPIAIGKAVAVGDFQGYIHFLSREDGAFVARLATDGSAIQAPPVSTGSSVV 385
           ++L NR LS PI+  + VAVGD+QGYIHF S+E+G   AR++TDGS I A P + G++ +
Sbjct: 316 NQLANRRLSTPISSSRLVAVGDYQGYIHFFSKENGLLAARISTDGSPILAAPANVGANFI 375

Query: 386 FQTKSGTVVAVAAE 399
           FQT+SGT+VAVAAE
Sbjct: 376 FQTQSGTLVAVAAE 389


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 725,671
Number of extensions: 30929
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 315
Effective length of database: 723,567
Effective search space: 227923605
Effective search space used: 227923605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)