BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2919.p
         (374 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094497|ref|YP_001099572.1| GTPase [Herminiimonas arsenicox...   547   e-157
gi|134096615|ref|YP_001101690.1| tRNA modification GTPase TrmE [...    56   4e-09

>gi|134094497|ref|YP_001099572.1| GTPase [Herminiimonas
           arsenicoxydans]
          Length = 338

 Score =  547 bits (1409), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 267/319 (83%), Positives = 292/319 (91%)

Query: 35  VTITGRRASPDAALFVGTGKAQEVADAVADLQLELVIFNHALSPAQQRNLERMLKVRVLD 94
           +TITG+RASPDAALFVG+GKA EVADA+ D ++++VIFNHALSPAQQRNLER LK+RV+D
Sbjct: 1   MTITGKRASPDAALFVGSGKANEVADAIVDHEIDIVIFNHALSPAQQRNLERHLKIRVVD 60

Query: 95  RTSLILDIFAQRAKSHEGKVQVELAQLQHLSTRLIRGWTHLERQKGGIGLRGPGETQLET 154
           RTSLILDIFAQRA+SH GKVQVELAQLQHLSTRLIRGWTHLERQKGGIGLRGPGETQLET
Sbjct: 61  RTSLILDIFAQRAQSHVGKVQVELAQLQHLSTRLIRGWTHLERQKGGIGLRGPGETQLET 120

Query: 155 DRRLLGERVKALRAVLAKLRRQHATQRRARGRNETFSVSLVGYTNAGKSTIFNALAKAGV 214
           DRRLLG RVKALRA L KL +QH TQRRARGRN  FSVSLVGYTNAGKST+FNALAK  +
Sbjct: 121 DRRLLGVRVKALRAKLEKLHKQHITQRRARGRNNAFSVSLVGYTNAGKSTLFNALAKTKM 180

Query: 215 YAANQLFATLDTTSRRVYLGEVGHVVISDTVGFIRELPHQLVEAFRATLEETIHADLLLH 274
            AA+QLFATLDTTSRR+YLGE G+VVISDTVGFIRELPHQLV AFRATLEETIHADLLLH
Sbjct: 181 LAADQLFATLDTTSRRIYLGEAGNVVISDTVGFIRELPHQLVAAFRATLEETIHADLLLH 240

Query: 275 VVDAASPVRMEQIEQVNLVLKEIGADHVPQILVWNKIDAAGLEPTVEYDEYGKIQRVFVS 334
           VVD ASP RMEQIE+VN VL+EIGAD +PQILVWNKIDAAGLEP +E DEY KI+RVF+S
Sbjct: 241 VVDGASPARMEQIEEVNAVLREIGADQIPQILVWNKIDAAGLEPALERDEYDKIRRVFIS 300

Query: 335 AQSGAGLDLLREAIAASLK 353
           AQ+G+GLDLLREAIA   K
Sbjct: 301 AQTGSGLDLLREAIAECAK 319


>gi|134096615|ref|YP_001101690.1| tRNA modification GTPase TrmE
           [Herminiimonas arsenicoxydans]
          Length = 466

 Score = 55.8 bits (133), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 14/161 (8%)

Query: 190 FSVSLVGYTNAGKSTIFNALAKAGVYAANQLFATLDTTSRRVYLGEVGHVVISDTVGFIR 249
            ++ L G  N GKS++ NALA + V     +  T           E   V + DT G IR
Sbjct: 225 LNIVLAGQPNVGKSSLLNALAGSDVAIVTPIAGTTRDKVIETIQIEGIPVNVIDTAG-IR 283

Query: 250 ELPHQLVEAFRATLEETI----HADLLLHVVDAA-SPVRMEQIEQVNLVLKEIGADHVPQ 304
           +      E  R  +E T      AD+++H++DA+  P R +  EQ+     E    +VP 
Sbjct: 284 DAADAGDEVERIGIERTWAAVQTADVIVHMLDASRGPTRAD--EQIT----ERFPANVPV 337

Query: 305 ILVWNKIDAAGLEPTVEYDEYGKIQRVFVSAQSGAGLDLLR 345
           + VWNKID +G  P +  D       +++SA    G+DLLR
Sbjct: 338 MRVWNKIDLSGHRPAI--DRMPDATHIYLSATGLLGMDLLR 376


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 666,741
Number of extensions: 27083
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 291
Effective length of database: 726,862
Effective search space: 211516842
Effective search space used: 211516842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)