BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2918.p
         (451 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094498|ref|YP_001099573.1| HflKC membrane-associated compl...   585   e-168

>gi|134094498|ref|YP_001099573.1| HflKC membrane-associated complex
           associates with HflC, part of modulator for protease
           specific for FtsH phage lambda cII repressor
           [Herminiimonas arsenicoxydans]
          Length = 431

 Score =  585 bits (1509), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 304/455 (66%), Positives = 352/455 (77%), Gaps = 28/455 (6%)

Query: 1   MLVSLFRKIGVKFSLNDPQWGRGSQNDNRDNQNNGNNGDKRPEKPSGNDDGPPDLDQLWR 60
           MLVSL +K G+KFSLNDP+WGRGS +       N N   KRP      +DGPPDLDQLWR
Sbjct: 1   MLVSLLKKFGLKFSLNDPRWGRGSDD-------NKNQDGKRP------NDGPPDLDQLWR 47

Query: 61  DFNQRIAGMLGRKGGGSDGGNGGGGFN----RGDVKGAGIGVGVIAIIVVFLWLASGFFI 116
           DFNQR+  + G +  G   G  GG       + D++GAGIG GVIA+IV FLWL SGFFI
Sbjct: 48  DFNQRLGNLFGNRKNGGGNGGNGGNTGGTGFKPDMRGAGIGAGVIAVIVAFLWLVSGFFI 107

Query: 117 VQEGQTAVVTTFGRYSHTTLPGFNWRWPYPIQGHEIVNMSQVRTAEIGYRGNVRNKQLKE 176
           VQEGQT VV TFG+YSH T  GFNWRWP PIQ HE VN+SQVRT E+GYRG+V+NKQ +E
Sbjct: 108 VQEGQTGVVLTFGKYSHMTPAGFNWRWPAPIQSHETVNVSQVRTVEVGYRGSVKNKQHQE 167

Query: 177 SLMLTDDENIIDIQFAVQYKLKNAAEWLFNNRDPDDSVRQVAEAAIREIVGRSKMDFVLY 236
           SLMLT+DENIIDIQFAVQY LKNA++W+FNNR+  + V+QVAE AIRE+VGRSKMDFVLY
Sbjct: 168 SLMLTEDENIIDIQFAVQYTLKNASDWVFNNREQGEMVKQVAETAIREVVGRSKMDFVLY 227

Query: 237 EGREKVALDVSQRMQQILDRYKSGVQITNVTMQGVQPPEQVQAAFDDAVKAGQDRERLKN 296
           EGREK+A D SQ MQQI+DRYK+GVQITNVTMQGVQPPEQVQA+FDDAVKAGQDRER KN
Sbjct: 228 EGREKIAFDTSQLMQQIVDRYKAGVQITNVTMQGVQPPEQVQASFDDAVKAGQDRERQKN 287

Query: 297 EGQAYANDVIPRASGAASRLLEEAEAYRSRVVANAEGDASRFTQVQEAYAKAPAVTRDRM 356
           EGQAYANDVIPRA GAASRL+EE+EAYRS V ANA+G+ASRF QV   Y KAPAVTRDRM
Sbjct: 288 EGQAYANDVIPRARGAASRLMEESEAYRSSVTANAQGEASRFKQVLVEYQKAPAVTRDRM 347

Query: 357 YLETMQQIFANTTKVMVDVKNGSNLLYLPLDKLIQQSVSDAAPAGAKSPASAAGQAAPSA 416
           YLETMQ+IF++TTKVMVD K G+NL+YLPLDKLI Q+ +          A A   A PS+
Sbjct: 348 YLETMQKIFSSTTKVMVDAKGGNNLIYLPLDKLIAQTAA------PAGAAVAPSAATPSS 401

Query: 417 ASTNSTAGTDTVYSSELMRDSRNRDPRESREREVR 451
             ++S A       ++L +DSR RD R SR+RE R
Sbjct: 402 LPSDSVA-----LETQLPQDSRTRDSRTSRDRESR 431


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 655,687
Number of extensions: 22218
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 2
Length of query: 451
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 366
Effective length of database: 720,272
Effective search space: 263619552
Effective search space used: 263619552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)