BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2917.p
         (296 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094499|ref|YP_001099574.1| HflKC membrane-associated compl...   475   e-136

>gi|134094499|ref|YP_001099574.1| HflKC membrane-associated complex
           associates with HflK, part of modulator for protease
           specific for FtsH phage lambda cII repressor
           [Herminiimonas arsenicoxydans]
          Length = 296

 Score =  475 bits (1223), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 229/296 (77%), Positives = 260/296 (87%)

Query: 1   MGRLVTSVIVAVVAIWLASSTIFVVDQRSSAIVFALGEVKQVITEPGLHFKLPPPFQNVM 60
           M RL++ VI   +A  +  ST+FVVDQR  AIVFALGEVK VI EPGLHFKLPPPFQNV+
Sbjct: 1   MNRLISYVIALAIAAGIFFSTMFVVDQRQYAIVFALGEVKTVINEPGLHFKLPPPFQNVV 60

Query: 61  YLDKRIQTLDTPDADRFITAEKMNVLVDAYVKWRIVDPRLYFVSFGADERRTQDRLSQIV 120
           +LDKRI TLDTPDADRFITAEK N+LVDA+VKWRIVDPRLYFVSF  DER  Q+R++QIV
Sbjct: 61  FLDKRILTLDTPDADRFITAEKKNILVDAFVKWRIVDPRLYFVSFSGDERSAQNRMAQIV 120

Query: 121 KAALNDEITKRTVREVISSQRNSVMDAIQARVANEAKQIGVEIIDVRLRRVDYVDQINNS 180
           KAALNDEITKRTVREVIS +R+ VMD IQ +V  EAKQIGVEI+DVRL+RVDYV+QIN S
Sbjct: 121 KAALNDEITKRTVREVISGERSKVMDGIQKKVTEEAKQIGVEIVDVRLKRVDYVEQINAS 180

Query: 181 VFERMKSERVRVANELRSTGAAESEKIRADADRQRVVILAEAYRESEKIRGAGDAKASQI 240
           VF+RMKSER RVANELRSTGAAESEKIRADADRQR VILAEAYR++E+IRG GDAKASQ+
Sbjct: 181 VFDRMKSERARVANELRSTGAAESEKIRADADRQRTVILAEAYRDAEQIRGEGDAKASQV 240

Query: 241 YAQAFGQNPDFYKFYRSLEAYRASFKSRHDVMVVDPSSEFFKYFKGIGGATSAAKK 296
           YAQAFGQNP+FYKFYRSLEAYR SFK+R+D++V+DP+SEFFKYFK     + AAKK
Sbjct: 241 YAQAFGQNPEFYKFYRSLEAYRGSFKTRNDMLVIDPNSEFFKYFKNPTTGSGAAKK 296


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 489,692
Number of extensions: 17454
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 215
Effective length of database: 733,452
Effective search space: 157692180
Effective search space used: 157692180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)