BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2916.p
         (386 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094500|ref|YP_001099575.1| ATP phosphoribosyltransferase [...   537   e-154
gi|134094492|ref|YP_001099567.1| histidine tRNA synthetase [Herm...    75   5e-15

>gi|134094500|ref|YP_001099575.1| ATP phosphoribosyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 360

 Score =  537 bits (1383), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 275/363 (75%), Positives = 303/363 (83%), Gaps = 3/363 (0%)

Query: 24  LRRRLLDNFRLYGYEMVMPPLLEYLESLLTGAGQDTDLRTFKLVDQLSGRTLGVRADMTT 83
           +RR ++DNF LYGYE+VMPP+LEYLESLL GAG D DLRTFKL+DQLSGRTLGVRADMTT
Sbjct: 1   MRRLIIDNFHLYGYELVMPPMLEYLESLLAGAGHDMDLRTFKLIDQLSGRTLGVRADMTT 60

Query: 84  QVARIDAHLLNRASVTRLCYAGSVLHTRPTGLHATREPIQIGAEIYGHAGLEADAEIQEL 143
           QVARIDAHLLNRAS+TRLCY GSVL TRP GLHATREP+QIGAE+YGH GLEADAEIQEL
Sbjct: 61  QVARIDAHLLNRASITRLCYCGSVLQTRPNGLHATREPLQIGAEVYGHGGLEADAEIQEL 120

Query: 144 ALNSLALAGMRTIRLDLCHVGVLRAIIANDAAAKRDEAQLFGLLQAKDVPGLKEITAAYQ 203
           AL SLALAG   +R+DLCHVGVLRAIIA+D  A++DE  L+  L+AKDVP L+E+T  Y 
Sbjct: 121 ALASLALAGFTQVRIDLCHVGVLRAIIASDVQAQKDENALYTFLRAKDVPALQEMTLTYG 180

Query: 204 EGTRAALLALPNLYGDISVIARARITLPALPGIAQALDELQALVELAAGHEGAAVTIDLA 263
             TR ALLALP LYGD++VIARAR  LP LPGI  ALDEL AL  LA      +VTIDLA
Sbjct: 181 ADTRRALLALPGLYGDVTVIARAREILPKLPGIDTALDELIALAGLAG---ETSVTIDLA 237

Query: 264 DLRGYHYHSGVMFSAYVPGLPNAVVRGGRYDHVGEAFGRARPATGFSLDLRELARLMPGA 323
           DL GY Y SGVMF+ YVPGLPNAV RGGRYDHVGEAFGRARPATGFS+DLRELARL+P A
Sbjct: 238 DLGGYQYESGVMFAIYVPGLPNAVARGGRYDHVGEAFGRARPATGFSMDLRELARLLPDA 297

Query: 324 ERKRAILAPWGRDAGLREKIAQLRQAGEIVIQSLPGHENDQDEFDCDRALDFSNGNWIIK 383
           E K AI APWGR+  LR KI  LR+AGEIVIQSL GHENDQDEF+CDR L   +GNWIIK
Sbjct: 298 EPKLAIRAPWGREPALRTKIGALRKAGEIVIQSLSGHENDQDEFECDRVLVLEDGNWIIK 357

Query: 384 NLG 386
           NLG
Sbjct: 358 NLG 360


>gi|134094492|ref|YP_001099567.1| histidine tRNA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 448

 Score = 75.1 bits (183), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 140/336 (41%), Gaps = 39/336 (11%)

Query: 8   ENIADVLPSEARKIEELRRRLLDNFRLYGYEMVMPPLLEYLESLLTGAGQDTDL---RTF 64
           + + D+LP++A   E     +    + YG++ +  P++E       G G  TD+     +
Sbjct: 14  KGMNDILPADAPLWELFENTVHTVLKSYGFQQIRTPIVEPTALFARGLGAVTDIVEKEMY 73

Query: 65  KLVDQLSGRTLGVRADMTTQVARID-AHLLNRASVTRLCYAGSVL-HTRPT-GLHATREP 121
              D ++G  L +R + T  V R    H L      RL Y+G +  H RP  G +  R+ 
Sbjct: 74  SFTDSMNGDELTLRPECTASVVRAALEHNLTYDGPKRLWYSGPMFRHERPQRGRY--RQF 131

Query: 122 IQIGAEIYGHAGLEADAEIQELALNSLALAGMRTIRLDLCHVGVLRA--------IIAND 173
            QIGAE  G +G + DAE+  +        G++ +RL+L  +G            I   +
Sbjct: 132 HQIGAEAIGFSGPDIDAELIMMCQRLWDDLGLQDVRLELNSIGNAEERNKHRADLISYFE 191

Query: 174 AAAKRDEAQLFGLLQAKDVPGLKEITAAYQEGTRAALLALPNLYGDISVIARARITLPAL 233
             A+  +A+    L +  +  L     A QE   AA    P L   +   +RA       
Sbjct: 192 QHAELLDAEAQKRLHSNPLRILDTKNPAMQEMVNAA----PKLLDYLGEDSRAH-----F 242

Query: 234 PGIAQALDELQALVELAAGHEGAAVTIDLADLRGYHYHSGVMFSAYVP--GLPNAVVRGG 291
            G+ + L+           H     TI+   +RG  Y++  +F       G    V  GG
Sbjct: 243 EGVQKILN-----------HNAIPFTINPRLVRGMDYYNRTVFEWVTDQLGSQGTVCGGG 291

Query: 292 RYDHVGEAF-GRARPATGFSLDLRELARLMPGAERK 326
           RYD + E F G+  PA GF++ +  L  LM  +  K
Sbjct: 292 RYDPLVEMFGGKPTPACGFAMGVERLLELMKASGEK 327


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 759,624
Number of extensions: 32355
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 386
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 303
Effective length of database: 726,862
Effective search space: 220239186
Effective search space used: 220239186
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)