BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2915.p
         (437 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094501|ref|YP_001099576.1| adenylosuccinate synthetase [He...   781   0.0  

>gi|134094501|ref|YP_001099576.1| adenylosuccinate synthetase
           [Herminiimonas arsenicoxydans]
          Length = 432

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/431 (87%), Positives = 400/431 (92%)

Query: 7   AKNVVVIGTQWGDEGKGKIVDWLTDHAQGVVRFQGGHNAGHTLVIGGKKTALQLIPSGIM 66
           AKNVVV+GTQWGDEGKGKIVDWLTDH+QGVVRFQGGHNAGHTLVIGG KTALQLIPSGIM
Sbjct: 2   AKNVVVVGTQWGDEGKGKIVDWLTDHSQGVVRFQGGHNAGHTLVIGGHKTALQLIPSGIM 61

Query: 67  RAGVACYIGNGVVLSVPDLLREIDKLEAAGVEVCSRLKVSDACPLILPYHVALDVAREAA 126
           R GVACYIGNGVVLSVPD+LREIDKL A GVEV SRLK+S+ACP+ILPYH ALDVARE A
Sbjct: 62  REGVACYIGNGVVLSVPDVLREIDKLHAIGVEVPSRLKISEACPIILPYHTALDVAREVA 121

Query: 127 RGVDKIGTTGKGIGPAYEDKVARRAIRVADLLNEKRFAEKLLANLDYHNFVLTHYLKTQP 186
           RG  KIGTTGKGIGPAYEDKVARRAIR ADLLNEKRFAEKL  NLDYHNFVL +YLK   
Sbjct: 122 RGDAKIGTTGKGIGPAYEDKVARRAIRAADLLNEKRFAEKLRENLDYHNFVLANYLKVAT 181

Query: 187 VDYQKTLDEALANVPRIKPMVTDVSSDLYAIHKAGGKILFEGAQGSLLDVDHGTYPFVTS 246
           VDYQKTLD+ALA+VPR+KPMV DVSS LYA   AG  +LFEGAQGSLLDVDHGTYP+VTS
Sbjct: 182 VDYQKTLDDALADVPRLKPMVGDVSSALYAAFNAGANLLFEGAQGSLLDVDHGTYPYVTS 241

Query: 247 SNCVAGNAAAGAGVGPGMLHYIMGITKAYTTRVGSGPFPAELPTDAGTGKHLASVGHEFG 306
           SNCVAGNA+ G+GVGPGMLHYI+GITKAYTTRVGSGPFP+ELPTD G GKHLA+VGHEFG
Sbjct: 242 SNCVAGNASTGSGVGPGMLHYILGITKAYTTRVGSGPFPSELPTDQGVGKHLATVGHEFG 301

Query: 307 TVTGRARRCGWFDAALLKRSVQINGVSGMCLTKLDVLDGLESLKLCTGYKLNGKTVDIFP 366
           TVTGRARRCGWFDAALLKRSVQINGV+GMC TKLDVLDGLE+L++CTGYKLNGK VDIFP
Sbjct: 302 TVTGRARRCGWFDAALLKRSVQINGVTGMCFTKLDVLDGLETLRICTGYKLNGKIVDIFP 361

Query: 367 VGAEEAAACEPIYEEMPGWSETTVGAKSLDALPANARAYIKRIEELVGVPIDMISTGPDR 426
           VGAE+AAACEPIYEEMPGW E TVGAK+L+ALPANARAYI RIE+LVGVPIDMISTGPDR
Sbjct: 362 VGAEDAAACEPIYEEMPGWKEATVGAKTLEALPANARAYIDRIEKLVGVPIDMISTGPDR 421

Query: 427 EETIVLRHPFK 437
           EETIVLRHPFK
Sbjct: 422 EETIVLRHPFK 432


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 846,250
Number of extensions: 35929
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 353
Effective length of database: 723,567
Effective search space: 255419151
Effective search space used: 255419151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)