BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2914.p
         (176 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094502|ref|YP_001099577.1| putative nucleotide phosphoribo...   277   3e-76

>gi|134094502|ref|YP_001099577.1| putative nucleotide
           phosphoribosyltransferase [Herminiimonas arsenicoxydans]
          Length = 178

 Score =  277 bits (708), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 128/175 (73%), Positives = 153/175 (87%)

Query: 1   MKISDDKDLWVSWDDYNRLIERLALKVYESGYQFDQVLCLARGGLRPGDVMSRIFDVPLA 60
           M  S DKDLWV+W++Y+  IERLAL V+ESG++FDQVLCLARGGLRPGDV SRIFDVPLA
Sbjct: 1   MPESSDKDLWVTWEEYHHAIERLALLVHESGWKFDQVLCLARGGLRPGDVFSRIFDVPLA 60

Query: 61  ILSTSSYREAAGTIRSSLDIAKYITITKGTLGGRILLVDDLVDSGVTLQKVMVHLKEHYP 120
           ILS SSYRE AGT++ +LDIA +ITI  G+LGG++LL+DDLVDSGVTL +V  HL E +P
Sbjct: 61  ILSASSYREGAGTMQGTLDIASHITIISGSLGGKVLLLDDLVDSGVTLAEVQRHLAEQFP 120

Query: 121 SVTEIKSAVLWWKACSVVEPDFHIDYLPTNPWIHQPFEEYDGLGPHQLAAWIKKG 175
           +VTE+KSAV+W+KACS  +PDF++DYLP NPWIHQPFEEYDGL PHQLAAW+KKG
Sbjct: 121 AVTEVKSAVIWYKACSSTKPDFYLDYLPHNPWIHQPFEEYDGLRPHQLAAWMKKG 175


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 356,773
Number of extensions: 13283
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 100
Effective length of database: 749,927
Effective search space: 74992700
Effective search space used: 74992700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)