BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2910.p (293 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 375 e-105 gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 159 2e-40 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 130 8e-32 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 124 7e-30 gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herm... 117 1e-27 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 375 bits (963), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/293 (62%), Positives = 229/293 (78%) Query: 1 MSIQSEELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELT 60 M I S++L+TFVAV+++GTL +AA+ L QTTS VSR LSRLEEKL SLLTRTTRRMELT Sbjct: 1 MDINSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELT 60 Query: 61 EEGEALLHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYP 120 +EG L +ARAIL AM++AE+ +R+R ++P G+LR+DAA PF+LH +VPHV FRA YP Sbjct: 61 DEGRLFLKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYP 120 Query: 121 DIELELTTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPE 180 I LELT+ND+ DL+E R DIAIRIG LQDSTLHAR L++ L+++ASPDYL R G P Sbjct: 121 QITLELTSNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPT 180 Query: 181 SVEALEQHQLIGFSQPDILNHWPLRHTAGDRYQTRPAIRASSGETIRHLALQGQGIACLS 240 + E L HQL+GF Q + N WP+RH G+ PA+ ASSGET+R LAL GQGIA L+ Sbjct: 181 TPEQLAGHQLLGFLQFESGNTWPIRHAGGEGLTVTPALFASSGETLRALALHGQGIASLA 240 Query: 241 SFMTDADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFLQCKL 293 +MT DIAAG LVR+L++Y +G+RQ+I AVYY NTQLSRRISCFL+FLQ KL Sbjct: 241 DYMTRDDIAAGRLVRILENYYTGYRQQIHAVYYRNTQLSRRISCFLEFLQQKL 293 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 159 bits (401), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 156/288 (54%), Gaps = 12/288 (4%) Query: 8 LRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELTEEGEALL 67 ++TFVAVVEA + ++A L+ + + VS+ + LE+ LG LL RTTRR+ LTE G A Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 68 HQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYPDIELELT 127 + IL +++AE + P G L+V V F + P + + YP++ L++ Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 128 TNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPESVEALEQ 187 DR +DL+E D+AIR+G L +S L AR L++ R+ + ASP YL G P++ E L+Q Sbjct: 121 LADRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLKQ 180 Query: 188 HQLIGFSQPDILNHWPLRHTAGDRYQTRPAI------RASSGETIRHLALQGQGIACLSS 241 H + +S + W + +TR A+ RA++G+ +R AL G G+ Sbjct: 181 HACLNYSYSSSGDEWVF-----GKGKTRAAVRVDGPMRANNGDMLRLAALDGAGLIWQPH 235 Query: 242 FMTDADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFL 289 F+ D+ AG LV L+ +S I A+Y LS ++ F+D+L Sbjct: 236 FIVADDVQAGRLVELMKD-ESDTELGIYAIYPSRKHLSAKVRTFVDYL 282 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 130 bits (327), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 145/287 (50%), Gaps = 7/287 (2%) Query: 7 ELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELTEEGEAL 66 +L F +V+ G+L++AA+ L T VS+ L+ +E +L LL RTTRR+ LT EGE Sbjct: 6 DLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTPEGEIY 65 Query: 67 LHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYPDIELEL 126 L ++ +E E + + G L++ A F + P + AF YP+++++L Sbjct: 66 LADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPEVDVQL 125 Query: 127 TTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPESVEALE 186 DR ++LVEQ D IR G+L D+ L AR ++ R + ASP YL G P + L+ Sbjct: 126 HLTDRPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKNHGIPLTPRDLQ 185 Query: 187 QHQLIGFSQPD-ILNHWPLRHTAGDRYQT---RPAIRASSGETIRHLALQGQGIACLSSF 242 +H I + D I W ++G + +T R ++ A+ GE AL GQGI S + Sbjct: 186 KHNCILLRESDEIYGSW--HFSSGTKQETVKVRGSLSANDGECATAWALDGQGIVVRSEW 243 Query: 243 MTDADIAAGHLVRLLDHYDSGFRQKISAVYYHNTQLSRRISCFLDFL 289 + +G L +L+ + + I V+ LS + +DF+ Sbjct: 244 DVAPYLRSGRLRTVLEDWQLP-QADIYIVFPTKNHLSAKTRALVDFM 289 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 124 bits (310), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 87/294 (29%), Positives = 141/294 (47%), Gaps = 17/294 (5%) Query: 6 EELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELTEEGEA 65 +++ FV VE + ++AA L+ T V R + LE++LG LL R+TRR+ LTEEG Sbjct: 5 KQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTEEGSV 64 Query: 66 LLHQARAILGAMEQAEDTVRMRSRKPVGKLRVDAAVPFMLHCVVPHVGAFRAAYPDIELE 125 L R +L ++QAE T+ K G L + A F V P+ F +P +++ Sbjct: 65 YLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPGLKMS 124 Query: 126 LTTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARCGTPESVEAL 185 DR +DLV++ D+ IRIG D A L++ + + +PDY + G P++++ L Sbjct: 125 FNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAANKRVVCGTPDYFKKHGKPKTLDDL 184 Query: 186 EQHQLIGFS-QPDILNHWPLRH---TAGDRYQTRPAIRASSGETIRHLALQGQGIACLSS 241 +H + F+ Q W H T R Q ++ + GE + +G GIA S Sbjct: 185 AKHNCLAFNLQGGQQRGWYFNHRGKTVSVRAQG--SLDCNDGELLHRWMSEGLGIAWRSV 242 Query: 242 FMTDADIAAGHLVRLLD-----HYDSGFRQKISAVYYHNTQLSRRISCFLDFLQ 290 + + + +G L +LD YD I AVY + ++ F+ L+ Sbjct: 243 WEIQSQLESGTLETVLDDFAIPEYD------IMAVYPQQRNVPAKVRLFISHLK 290 >gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 117 bits (292), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/263 (31%), Positives = 131/263 (49%), Gaps = 8/263 (3%) Query: 1 MSIQSEELRTFVAVVEAGTLSSAAEVLEQTTSGVSRALSRLEEKLGASLLTRTTRRMELT 60 M+ + E LR F E+ + AA L + GV+RA+ +LE+ G L R+TR++ +T Sbjct: 1 MNKEMELLRIFRVAAESSSFRDAAVRLGTSPQGVTRAIQQLEQHYGEVLFHRSTRQVRIT 60 Query: 61 EEGEALLHQARAILGAMEQAEDTVRMRSRKP----VGKLRVDAAVPFMLHCVVPHVGAFR 116 GE LL Q R A+E+ ED R G +R+ A V+P + Sbjct: 61 AFGEGLLDQVRP---ALERFEDLWRTPGSDQQASLSGTVRITAPHSLGTRAVLPALERVA 117 Query: 117 AAYPDIELELTTNDRFIDLVEQRADIAIRIGELQDSTLHARPLSSARLNIVASPDYLARC 176 A +PDI L++ +DR + V++ D+ IR+G ++DS AR + +L IVA+P + + Sbjct: 118 ARHPDITLDVRLSDRISNTVDEGIDVGIRVGFMRDSRFVARKAADMKLPIVAAPRLIKKV 177 Query: 177 GTPESVEALEQHQLIGFSQPDILNHWPLRHTAGDRY-QTRPAIRASSGETIRHLALQGQG 235 G PE+++AL + WP AG ++ P + A + + AL G Sbjct: 178 GVPENIDALSSLPATVALDINTGRPWPWHFKAGRQWTPAAPTLVADNADMEMGAALAGIA 237 Query: 236 IACLSSFMTDADIAAGHLVRLLD 258 A L+ +M IA+G LVR+L+ Sbjct: 238 FAQLADYMAAPYIASGKLVRVLE 260 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.133 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 492,083 Number of extensions: 19290 Number of successful extensions: 87 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 81 Number of HSP's successfully gapped: 14 Length of query: 293 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 212 Effective length of database: 733,452 Effective search space: 155491824 Effective search space used: 155491824 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)