BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2907.p (243 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 239 1e-64 gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 218 2e-58 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 209 1e-55 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 120 6e-29 gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC t... 117 5e-28 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 239 bits (609), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 115/235 (48%), Positives = 167/235 (71%), Gaps = 2/235 (0%) Query: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQR--GRV 67 +L++ L VAYG I+AVKGI L + +GE+ L+GANGAGK+T+L AI+G + R G + Sbjct: 5 VLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRVDGHI 64 Query: 68 LLNGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVY 127 GQ + + +V + V EGR T ++++ENL +GA+TR DK G+A D+E + Sbjct: 65 EYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRNDKQGIADDMEKWF 124 Query: 128 SIFPRLKHRATGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQ 187 ++FPRLK RA +AG LSGGEQQMLA+ RALM+ P++LLLDEPSMGL+P+++++IF +++ Sbjct: 125 AVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 188 EINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 + G+T+LLVEQN R AL+ A R YV+E+G I ++ +L +PKV EAYLG Sbjct: 185 SVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLNDPKVREAYLG 239 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 218 bits (555), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 107/237 (45%), Positives = 162/237 (68%), Gaps = 3/237 (1%) Query: 9 PILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVL 68 P+L+VE+L V YGHIEA +GIS+ + EGE ++G+NGAGKS++L AI+G+VK G + Sbjct: 4 PLLKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPASGSIT 63 Query: 69 LNGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVA---RDLEW 125 L G+ + ++ H +V GV V EGR +VE+NL LG + + + GVA D++ Sbjct: 64 LGGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAALRDDIDR 123 Query: 126 VYSIFPRLKHRATGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRI 185 ++ +FPRLK R T AG+LSGGEQQML I R LM+ P++LL+DE S+GLAP I+ +F + Sbjct: 124 MFQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKILDFLFPV 183 Query: 186 VQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 + ++N+ G+++LLVEQ +AL + R YV+E G + + ++L+ + V+EAYLG Sbjct: 184 LVDLNRQGLSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDLVKDAAVMEAYLG 240 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 209 bits (532), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 106/232 (45%), Positives = 150/232 (64%) Query: 11 LQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLN 70 L V+ L Y + + +S+ + G+IT ++GANGAGKST + +I GL ++G +L N Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 71 GQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSIF 130 G++L H I+ SG+ + EGR ++V ENLALGA+ + V L VY IF Sbjct: 64 GRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVTNSAVVRERLARVYEIF 123 Query: 131 PRLKHRATGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEIN 190 PRLK RA LAG +SGGEQ M++IGR LMA+P++L++DEPS+GL+PL ++E F +++ IN Sbjct: 124 PRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVIRRIN 183 Query: 191 KTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 G+TVLLVEQN RQ L I+ GYVL G+++ E + L N V AY G Sbjct: 184 ALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASNDDVRAAYFG 235 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 120 bits (301), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 132/238 (55%), Gaps = 7/238 (2%) Query: 11 LQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLN 70 L V L +YG + V+ ++L + GE+ L+G NGAGK+TS I GLV + GR+ L+ Sbjct: 5 LIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELD 64 Query: 71 GQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENL-ALGAYTRKD-----KDGVARDLE 124 G D+ + H+ + G+ + + + L+VE+N+ A+ R + K+ + + L+ Sbjct: 65 GVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKALSKEQIEQRLD 124 Query: 125 WVYSIFPRLKHRATGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFR 184 + + K R A +LSGGE++ + I RAL P+ +LLDEP G+ P+ + EI R Sbjct: 125 TLLADLQIEKLRENQ-ALSLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVIEIQR 183 Query: 185 IVQEINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 IV+ + + G+ VL+ + NVR+ L I R Y++ G ++ +++ + V YLG Sbjct: 184 IVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVYLG 241 >gi|134093662|ref|YP_001098737.1| branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 117 bits (293), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 116/214 (54%) Query: 11 LQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQRGRVLLN 70 L +E++ V ++ IS+ + GE+ LVG NGAGKST+ +I G + G + Sbjct: 3 LALENVNVILAGNPVLRDISMHIEPGELVCLVGRNGAGKSTTFRSIMGFQPLKSGAIKWK 62 Query: 71 GQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLALGAYTRKDKDGVARDLEWVYSIF 130 + M H+IVE G+ EG LTVE+N+AL +TRK ++ Y++F Sbjct: 63 RSAINGMQTHKIVELGLGYTPEGSDVFGDLTVEDNIALPTWTRKSGRSAQERIDEAYAVF 122 Query: 131 PRLKHRATGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQEIN 190 P+LK LSGGE++M++I RAL P++LLLDE GL+P II I +Q I Sbjct: 123 PKLKQYLHRGGQQLSGGERKMVSIARALALDPELLLLDEAFEGLSPAIIPTISEGLQSIL 182 Query: 191 KTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLE 224 K G VLL E N A R YV+E G+IV E Sbjct: 183 KQGRGVLLAESNFYHLPPFADRLYVIERGEIVFE 216 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.135 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 438,890 Number of extensions: 17441 Number of successful extensions: 200 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 48 Length of query: 243 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 164 Effective length of database: 740,042 Effective search space: 121366888 Effective search space used: 121366888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)