BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2906.p (253 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095637|ref|YP_001100712.1| high-affinity branched-chain am... 265 2e-72 gi|134095848|ref|YP_001100923.1| high-affinity branched-chain am... 197 3e-52 gi|134096408|ref|YP_001101483.1| high-affinity branched-chain am... 168 2e-43 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 155 2e-39 gi|134093663|ref|YP_001098738.1| putative branched-chain amino a... 147 5e-37 >gi|134095637|ref|YP_001100712.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 260 Score = 265 bits (677), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 135/249 (54%), Positives = 169/249 (67%) Query: 1 MLLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR 60 ++L + ++SK FGGLQ L VN + QG+I+GLIGPNGAGKTT FN+ITGL +A SGS Sbjct: 9 IILNIANVSKRFGGLQALTDVNVKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADSGSFE 68 Query: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTF 120 APH + + GIARTFQNIR+F EMT LENV+VG H + G+ +F+ Sbjct: 69 LAGKAYSPSAPHLVAKAGIARTFQNIRLFGEMTALENVMVGRHVRTHQGLFGAVFHHKAA 128 Query: 121 RRAEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAG 180 R+ E R RA+ELL +V + A A LSYG+QR+LE ARALAT P+LL LDEP AG Sbjct: 129 RQEEAAIRARAMELLDFVGIAQFAGRTARHLSYGDQRRLEIARALATDPQLLALDEPAAG 188 Query: 181 MNPAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNN 240 MN EK L +V IK G TI +IEHD++ VMGLC+RI VL++GK IAEG P ++ N Sbjct: 189 MNATEKLGLRELLVKIKAEGKTILLIEHDVKLVMGLCDRITVLDYGKPIAEGVPADVQKN 248 Query: 241 QEVIEAYLG 249 VIEAYLG Sbjct: 249 PAVIEAYLG 257 >gi|134095848|ref|YP_001100923.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 608 Score = 197 bits (502), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 104/250 (41%), Positives = 148/250 (59%) Query: 3 LQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRFN 62 LQ D++ FGGL V+ +K G + +IGPNGAGK+T N ++G R +SGSI F Sbjct: 348 LQTKDMTMAFGGLIANDKVSEVLKAGTVHSVIGPNGAGKSTFINCVSGFYRPTSGSIEFM 407 Query: 63 DDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTFRR 122 A H++ G+ARTFQN +F +MT LENV+VG G+ + L L ++ Sbjct: 408 GQIATAKQSHQLARMGLARTFQNTELFGDMTCLENVLVGADSRYRSGLFATLLRLPSYFH 467 Query: 123 AEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGMN 182 E++ A LL +V LD A A +L +G QR+LE ARALA PKLLLLDEP AG+ Sbjct: 468 DERRYAAEARCLLEYVGLDDYAEEKARNLPFGHQRRLEIARALAMSPKLLLLDEPAAGLT 527 Query: 183 PAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQE 242 E +LM I N+ T+ ++EH + +M + + + VL++GK+IA GT ++++N Sbjct: 528 HGEIEDLMKLIRNLASHQITVLLVEHHVDMIMAVSDHVTVLDYGKVIASGTVAEVRSNPA 587 Query: 243 VIEAYLGKEE 252 VIEAY G E Sbjct: 588 VIEAYFGTGE 597 >gi|134096408|ref|YP_001101483.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 276 Score = 168 bits (426), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 101/256 (39%), Positives = 156/256 (60%), Gaps = 6/256 (2%) Query: 2 LLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRF 61 L+ D++ FGGL L +N ++ +GE+ GL+GPNG+GKTT FN++TGL +ASSGSI + Sbjct: 22 LVSARDLTMRFGGLTALDQLNLHIVEGEVLGLLGPNGSGKTTFFNVLTGLYKASSGSIIY 81 Query: 62 NDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTFR 121 ++ P +I G+ARTFQ R+ +T+ +N+V+G ++H+ +G+ LF F Sbjct: 82 QGREVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMQHGLFFNLFRRKAF- 140 Query: 122 RAEQQARERALE-LLSWVRLDHKAHML--ADSLSYGEQRKLEFARALATKPKLLLLDEPV 178 RAE A +E LL A M ++ S ++R++E RAL ++P+LLLLDEP Sbjct: 141 RAEYDAYVAKVEALLHIFSPPLVARMFEPVETFSMIDRRRIEVCRALLSEPRLLLLDEPS 200 Query: 179 AGMNPAEKTELMSEIVNIKQR--GFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQ 236 AGM E LM +I+ ++ + T+ +IEH+M + + +R V N+GK IAEGT + Sbjct: 201 AGMTHDETEALMDDILQVRNKLSNLTVVLIEHEMNVIKRITDRCIVFNYGKKIAEGTYAE 260 Query: 237 IKNNQEVIEAYLGKEE 252 I + V AYLG++E Sbjct: 261 ITADPNVQTAYLGEDE 276 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 155 bits (391), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 145/248 (58%), Gaps = 10/248 (4%) Query: 3 LQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIRFN 62 L ++ + K++G QV++ V V+ GE+ GL+GPNGAGKTT F +I GL+ + +G I + Sbjct: 5 LIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELD 64 Query: 63 DDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNYGVASLLFNLGTFRR 122 DI HK + G++ Q VF+++++ +N+ + G A Sbjct: 65 GVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNIRAVLELQRVNGKAL---------- 114 Query: 123 AEQQARERALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDEPVAGMN 182 +++Q +R LL+ ++++ A SLS GE+R++E ARALAT P+ +LLDEP AG++ Sbjct: 115 SKEQIEQRLDTLLADLQIEKLRENQALSLSGGERRRVEIARALATNPRFVLLDEPFAGVD 174 Query: 183 PAEKTELMSEIVNIKQRGFTIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQE 242 P E+ + +K+RG + + +H++R +G+C+R ++N G ++A G PD I ++ Sbjct: 175 PIAVIEIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADES 234 Query: 243 VIEAYLGK 250 V YLG+ Sbjct: 235 VRRVYLGE 242 >gi|134093663|ref|YP_001098738.1| putative branched-chain amino acid ABC transporter, ATP-binding protein [Herminiimonas arsenicoxydans] Length = 255 Score = 147 bits (371), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 92/256 (35%), Positives = 140/256 (54%), Gaps = 15/256 (5%) Query: 1 MLLQLNDISKNFGGLQVLQGVNFNVKQGEIFGLIGPNGAGKTTVFNLITGLLRASSGSIR 60 +LLQ IS+++G L V+ +V +GE ++GPNGAGKTT+ N++TGL + ++G++ Sbjct: 6 VLLQAQQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGNVH 65 Query: 61 FNDDDIGAVAPHKITERGIARTFQNIRVFKEMTLLENVVVGMHEHLNY---GVASLLFNL 117 FN +I V + RG+AR FQ +F E+T+ E + V +LN G SL Sbjct: 66 FNGSNIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNMRWNGFGSL---F 122 Query: 118 GTFRRAEQQARER-ALELLSWVRLDHKAHMLADSLSYGEQRKLEFARALATKPKLLLLDE 176 G+ + + R A L W LD K SL +G ++ L+ A A A PK++LLDE Sbjct: 123 GSRKVNDIVVRTADAFGLAPW--LDTK----GSSLPHGRRKLLDVASAFALHPKVMLLDE 176 Query: 177 PVAGMNPAEKTELMSEIVN-IKQRGF-TIFMIEHDMRFVMGLCERIAVLNFGKIIAEGTP 234 P AG++ A+K +M ++ K G I ++EHDM V RI + GK IA+ Sbjct: 177 PTAGVSTADKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIIAMQAGKKIADLPR 236 Query: 235 DQIKNNQEVIEAYLGK 250 D+ N+E+I +GK Sbjct: 237 DEFFANEEIISIVVGK 252 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.138 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 438,852 Number of extensions: 17018 Number of successful extensions: 212 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 161 Number of HSP's successfully gapped: 44 Length of query: 253 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 173 Effective length of database: 736,747 Effective search space: 127457231 Effective search space used: 127457231 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)