BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2903.p (385 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390 [... 94 1e-20 gi|134095850|ref|YP_001100925.1| putative ABC-type branched-chai... 91 1e-19 gi|134093984|ref|YP_001099059.1| putative amino acid ABC transpo... 84 2e-17 gi|134094935|ref|YP_001100010.1| putative extracellular ligand-b... 79 4e-16 gi|134096411|ref|YP_001101486.1| putative branched chain amino a... 62 5e-11 >gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390 [Herminiimonas arsenicoxydans] Length = 429 Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 100/373 (26%), Positives = 172/373 (46%), Gaps = 28/373 (7%) Query: 2 QFNTMLKTIPA-LLIGAA--LSQAALAAD--IKLGVAEALTGPAAKYGVAIKNGFTLASE 56 Q ++LK I A + +GA+ L A A + I++G+ G A G G + Sbjct: 9 QRRSVLKAIGAGVAVGASGFLGVPAFAQNKPIRIGIIAPRGGVAGTIGECGLRGVEWTTA 68 Query: 57 EINAKGGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIAN 116 INA GG+ G K+ LVI++E K + I+ F+KL+ Q+KV V G S + A P A Sbjct: 69 RINAAGGIGGRKVELVIQEETSPK-DTIDRFRKLVLQEKVDCVQGIVSSGVSLALAPAAE 127 Query: 117 ASKV-VVFGTSNTADGITAMGP---FTFRNSVMEADVLPVTVKAAVKHF--GIKKVAVIY 170 S++ +F T DG+ P + FR++ E + + ++ A+KHF K++A + Sbjct: 128 DSRMPTIFWDGTTQDGVKETMPKPKYVFRSTDNECEAVMASL-LAIKHFKGKFKRIACV- 185 Query: 171 GNDDAFTKSGYDVFKATLEQQKIPV-TTTEAYAK-GDVDFKAQLTKIKAGNPDAIVCSCL 228 D ++ ++ + F+A L++ I +E ++K G++D + + +KA PD I S L Sbjct: 186 NPDYSYGRNTWTAFQALLKKYGIEHEVVSEQWSKIGNLDLTSNVAALKAAKPDLIFSSLL 245 Query: 229 AEEAANIILQTRALGMKQ------PFIGGNGLNSPKLFEIAKDA-GDNTL-MGSPWSAEN 280 + + Q G+ + P G K F G NT+ P ++ Sbjct: 246 FADLPVFMKQAHNAGLTEGTRFVLPAAGWQHTAMKKEFTPEGIVWGHNTMYFDDPKASAT 305 Query: 281 QTPANKAFIAAYKAKFGSDPDQFAAQAYDAMYIVADALKTVKLSGNLAKDRDALRAALPA 340 Q K F+ Y K+ P A +AY +M + ++ + + + AA+P Sbjct: 306 Q----KEFVKWYADKYKDYPHWEADRAYFSMMVYKAGVEKALAAKKSWPTPEEICAAIPG 361 Query: 341 VKIDGATGKFAFR 353 V+++ GK A R Sbjct: 362 VQVESLGGKGAMR 374 >gi|134095850|ref|YP_001100925.1| putative ABC-type branched-chain amino acid transport systems [Herminiimonas arsenicoxydans] Length = 397 Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 104/356 (29%), Positives = 159/356 (44%), Gaps = 20/356 (5%) Query: 9 TIPALLIGAALSQAALAADIK--LGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNG 66 TI A L+ AA + +A A + K +G + A TG AA G+A++ G +A +EINAKGGV G Sbjct: 12 TIAASLMLAAGAMSAHAQERKPCIGFSGAFTGAAAFSGLAVEMGAEVAIDEINAKGGVLG 71 Query: 67 DKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANASKVVVFGTS 126 KL+LV D+ G+ + ++ +++ + +A+ G S A A + G Sbjct: 72 QKLSLVKYDDAGQPPKGVDNTRRVAMANNCIAILGGYHSGVALAQREAVEQIGIPYIGAF 131 Query: 127 NTADGI----TAMGPFTFRNSVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYD 182 I T + + FR S + V A+ H KKVA+ Y N + D Sbjct: 132 AAGTKIIEPDTGVNNWMFRVSAKDRWVAAYLSDVALAHSPGKKVAIFYENTGWGNGAAPD 191 Query: 183 VFKATLEQQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRAL 242 V KA LE + + E + GD D AQL + + +AIV L E I+ L Sbjct: 192 V-KAALEARGVKPVAMETFNWGDQDMTAQLMRARDAGAEAIVMFGLDREGNQILRGMDKL 250 Query: 243 GMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSPWSAENQTPANKAFI-----AAYKAKFG 297 K GL + L E+A + + +S + A A + YK K Sbjct: 251 NYKPAIASAWGL-AGNLGELAGPLANGVFVFQTFSWMGKQDAKTAAVYDALAKKYKLKAP 309 Query: 298 SD--PDQFAAQAYDAMYIVADALKTVKLSGNLAKDRDALRAALPAVKIDGATGKFA 351 +D A AYDA++I+A K ++ +G+ DR +R AL V+ G +A Sbjct: 310 ADLKAGSGTANAYDAIHILA---KAIEAAGSF--DRVKVRDALFNVQHRGLVANYA 360 >gi|134093984|ref|YP_001099059.1| putative amino acid ABC transporter [Herminiimonas arsenicoxydans] Length = 381 Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 140/304 (46%), Gaps = 19/304 (6%) Query: 28 IKLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNGD---KLALVIEDEQGKKEEAI 84 IK+G +TG A G +NG +A E++NAKG G K L+ ED+ ++A Sbjct: 29 IKIGSVAPITGTDAHMGKDNENGARMAVEDLNAKGTTIGGKKVKFQLLAEDDASDPKQAT 88 Query: 85 NVFKKLIFQDKVLAVFGPTLSNSAFAADPIANASKVVVFGTSNTADGITAMGPFT-FRNS 143 +KL+ V+AV G S + A I + + S T T G T FR Sbjct: 89 AAAQKLV-DAGVVAVIGHLNSGTTIPASRIYANAGIPQVSPSATNPKYTQQGFKTAFRVV 147 Query: 144 VMEADVLPVTVKAAVKHFGIKKVAVIYGNDD--AFTKSGYDVFKATLEQQKIPVTTTEAY 201 +A + V + AVK G K VAVI DD A+ + D F ++ + ++ Sbjct: 148 ANDAQLGQVLGQYAVKTLGGKSVAVI---DDRTAYGQGVADEFAKGVKAAGGSIVASQYT 204 Query: 202 AKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRALGMKQPFIGGNGLNSPKLFE 261 DF + LT IKA PD I + ++ Q + LG+ F+GG+G+ + L Sbjct: 205 NNKATDFNSILTSIKAKKPDIIFFGGMDAVGGPMLRQMKQLGINAKFMGGDGICTGSLPG 264 Query: 262 IAKDA-GDNTLM-----GSPWSAENQTPANKAFIAAYKAKFGSDPDQFAAQAYDAMYIVA 315 +A A GDN ++ G P E + + F A+YK +FG + AA AYDA V Sbjct: 265 LAGTALGDNQVVCAEAGGVP---EARRKGVEDFRASYKKRFGVEVVYTAAYAYDATNAVV 321 Query: 316 DALK 319 +A+K Sbjct: 322 EAMK 325 >gi|134094935|ref|YP_001100010.1| putative extracellular ligand-binding receptor [Herminiimonas arsenicoxydans] Length = 426 Score = 79.0 bits (193), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 80/332 (24%), Positives = 150/332 (45%), Gaps = 23/332 (6%) Query: 28 IKLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVNGDKLALVIEDEQGKKEEAINVF 87 I LGV + TG A G + + L ++N +GG+ G ++ + + D++ + + A N++ Sbjct: 70 IHLGVTVSKTGKYAALGAMNEKAYRLWERDVNRRGGLLGKQVKITMLDDKSEADLAGNLY 129 Query: 88 KKLIFQDKVLAVFGPTLSNSAFAADPIANASKVVVFGTSNTADGITAMGP-FTF----RN 142 +KLI DKV V GP S+ A I ++ + + +AD I G + F + Sbjct: 130 RKLIIDDKVDLVLGPYSSDLTEAVANITELHRMPLLASGASADSIWQQGRNYVFGIYVTS 189 Query: 143 SVMEADVLPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYDVFKATLEQQK---IPVTTTE 199 S L + VK+ GI ++A++ DD+F++S + T E K + + + Sbjct: 190 SKYSVGFLELLVKS-----GINRIAIV-AADDSFSQS---ISIGTAEWAKRYELQMVLSA 240 Query: 200 AYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRALGMK-QPFIGGNGLNSPK 258 + KG D + + + +A++ + ++A N + +G + + G K Sbjct: 241 TFKKGSADIRDSIQAARLAGAEAVIVAGHFDDAVNGRRALKDIGWTPKAYYATVGPAIQK 300 Query: 259 LFEIAKDAGDNTLMGSPWSAENQTPANKAFIAAYKAKFGSDPDQFAAQAYDAMYIVADAL 318 + KD + T S W P + F +++ ++G P AA AY A I+ A+ Sbjct: 301 FSDTLKDDANYTYSTSQWEPTLPYPGAREFALSFREEYGILPSYHAASAYAAGQILEAAI 360 Query: 319 KTVKLSGNLAKDRDALRAALPAVKIDGATGKF 350 + +K + DR+ LR AL + G++ Sbjct: 361 RKIK-----SIDREKLRHALSRLDAITVMGRY 387 >gi|134096411|ref|YP_001101486.1| putative branched chain amino acid binding protein [Herminiimonas arsenicoxydans] Length = 390 Score = 62.0 bits (149), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 92/368 (25%), Positives = 145/368 (39%), Gaps = 40/368 (10%) Query: 4 NTMLKTIPALLIGAALSQAALAAD--IKLGVAEALTGPAAKYGVAIKNGFTLASEEINAK 61 NT+LKT +A +K+ LTG + G+ +N LA NA Sbjct: 5 NTVLKTAALGAALGLSLLTPASAKDVVKIAFVGPLTGGTSSIGLGGRNSADLAVRLRNAD 64 Query: 62 GGVNGDKLALVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANASK-- 119 LV +D++ + + V K+ ++A G T SA A +A ++ Sbjct: 65 PKAK-YTYELVSQDDECRPNVGVQVATKIAADKNIIA--GVTHFCSAVAMGTVAVYNRFG 121 Query: 120 --VVVFGTSNTADGITAMGPFTFRNSVMEADVLPVTV----KAAVKHF---GIKKVAVIY 170 VVV+G + T+ N+ E + T+ + A K G KK A+I+ Sbjct: 122 LPVVVWGA--------VLPEITYGNNFKEVHRVNGTMINQSEVAAKFMADQGYKKFAIIH 173 Query: 171 GNDDAFTKSGYDVFKATLEQQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAE 230 D + K F L++ V T DF +LTKI+ PD + L Sbjct: 174 DTTD-YGKGHNKYFSEFLKKNGATVLGTFGVTADQQDFSTELTKIRELKPDVVYFGGLTP 232 Query: 231 EAANIILQTRALGMKQPFIGGNGLNSPKLFE-IAKDAGDNTLM---GSPWSAENQTPANK 286 I Q LG+K F G +G+ S + + + + +L G+PW + P Sbjct: 233 LGVRIRTQMEKLGIKAQFEGTSGIKSDAYIQGVGEKLAEGSLAFLEGAPWE---KIPGGL 289 Query: 287 AFIAAY-KAKFGSDPDQFAAQAYDAMYIVADALKTVKLSGNLAKDRDALRAALPAVK-ID 344 F A Y K K+ P+ + +Y A ++ DA++ V DR +R L K +D Sbjct: 290 FFTAQYQKQKYSEPPEAYGTFSYAAANLIMDAVEKV------GPDRKKVRDVLNNTKNVD 343 Query: 345 GATGKFAF 352 GK F Sbjct: 344 TLIGKVTF 351 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 655,833 Number of extensions: 25648 Number of successful extensions: 90 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 83 Number of HSP's successfully gapped: 7 Length of query: 385 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 302 Effective length of database: 726,862 Effective search space: 219512324 Effective search space used: 219512324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)