BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2902.p
         (464 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094237|ref|YP_001099312.1| argininosuccinate lyase [Hermin...   822   0.0  
gi|134094014|ref|YP_001099089.1| aspartate ammonia-lyase [Hermin...    62   6e-11

>gi|134094237|ref|YP_001099312.1| argininosuccinate lyase
           [Herminiimonas arsenicoxydans]
          Length = 464

 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/463 (87%), Positives = 435/463 (93%)

Query: 1   MTDQFAKKGEAWSARFSEPVSDLVKRYTASVFFDNRLAQVDIQGSLAHAEMLAHQGIISA 60
           MT Q +KKGEAWSARF+EPVSDLVKRYTASVFFD RLAQVDIQGSLAHAEMLAHQ IIS 
Sbjct: 1   MTAQLSKKGEAWSARFNEPVSDLVKRYTASVFFDKRLAQVDIQGSLAHAEMLAHQNIISQ 60

Query: 61  ADYAEIQRGMAQIKGEIEAGQFEWLLDLEDVHLNIEKRLTELVGDAGKRLHTGRSRNDQV 120
            D+AEI+RGMAQI  EI AG+FEWLLDLEDVHLNIEKRLTELVGDAGKRLHTGRSRNDQV
Sbjct: 61  EDHAEIRRGMAQILEEITAGKFEWLLDLEDVHLNIEKRLTELVGDAGKRLHTGRSRNDQV 120

Query: 121 ATDIRLYMRGAVDDIIGLLRELRAALLDLAEQHADTILPGFTHMQVAQPITFGHHVLAYV 180
           ATDIRLY+R  +D+I+GLLR+LR ALLDLAEQHADTILPGFTHMQVAQPITFGHH+LAYV
Sbjct: 121 ATDIRLYVRSEIDNIVGLLRDLRLALLDLAEQHADTILPGFTHMQVAQPITFGHHMLAYV 180

Query: 181 EMFGRDAERMIDARKRINRLPLGAAALAGTTFPIDRLRVAKTLGFDDVCRNSLDAVSDRD 240
           EMF RDAERM D RKR+NRLPLGAAALAGTTFPIDR RVAKTLGFDDVC NSLDAVSDRD
Sbjct: 181 EMFSRDAERMQDCRKRVNRLPLGAAALAGTTFPIDRERVAKTLGFDDVCHNSLDAVSDRD 240

Query: 241 FAIEFCAAAALVMTHISRMSEELVIWMSPRVGFIDIADRFCTGSSIMPQKKNPDVPELAR 300
           FAIEFCAAAAL+MTH+SRMSEELVIWMSPR+GFIDIADRFCTGSSIMPQKKNPDVPELAR
Sbjct: 241 FAIEFCAAAALIMTHVSRMSEELVIWMSPRIGFIDIADRFCTGSSIMPQKKNPDVPELAR 300

Query: 301 GKTGRVNGHLISLLTLMKGQPLAYNKDNQEDKEPLFDTVDTLTDTLRIFADMARGISVKP 360
           GKTGRVNGHLI+LLTLMKGQPLAYNKDNQEDKEPLFDTVDT+ DTLRIFADMA GI+VKP
Sbjct: 301 GKTGRVNGHLIALLTLMKGQPLAYNKDNQEDKEPLFDTVDTVVDTLRIFADMATGITVKP 360

Query: 361 DAMRAAALQGYATATDLADYLVKKGLPFRDAHEAVAHAVRTCVDKGCDLADLSLDELRAF 420
           DAMRAAALQGYATATDLADYLVKKGLPFRDAHEAVAHAVR CVD+G DL+DL+L+E++AF
Sbjct: 361 DAMRAAALQGYATATDLADYLVKKGLPFRDAHEAVAHAVRACVDRGIDLSDLTLEEMQAF 420

Query: 421 SSLIGEDVFAVLTLEGSVAARDHIGGTAPNQVRAAIAHIRKEL 463
           S LI  D+FAVLTLEGSVAAR+H+GGTAP QVRAAIA  R +L
Sbjct: 421 SKLIEADIFAVLTLEGSVAARNHVGGTAPQQVRAAIARHRAKL 463


>gi|134094014|ref|YP_001099089.1| aspartate ammonia-lyase
           [Herminiimonas arsenicoxydans]
          Length = 466

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 108/243 (44%), Gaps = 10/243 (4%)

Query: 92  HLNIEKRLTELVGDAGKRLHTGRSRNDQVATDIRLYMRGAVDDIIGLLRELRAALLDLAE 151
           HL ++K   +++      ++  +S ND   T +++ +   +  ++  L  LR A    A 
Sbjct: 116 HLGLDKGRYDVI-HPNDHVNASQSTNDAYPTALKIAIWFDLHQLLQALANLRGAFEAKAT 174

Query: 152 QHADTILPGFTHMQVAQPITFGHHVLAYVEMFGRDAERMIDARKRINRLPLGAAALA-GT 210
           +    +  G T +Q A P+T G    A+  M   D +R+ +    +  + LG  A+  G 
Sbjct: 175 EFVSILKIGRTQLQDAVPMTLGQEFAAFASMIADDEKRLRETAILMTEVNLGGTAIGTGI 234

Query: 211 TFPIDRL-----RVAKTLGFDDV-CRNSLDAVSDRDFAIEFCAAAALVMTHISRMSEELV 264
             P+  +     ++A+  G      R+ + A SD    ++       + T +S++S +L 
Sbjct: 235 NAPVGYVDVVIPKLAELSGVPVTKARDMIAATSDTSGFVDVSGILKRIATKLSKISNDLR 294

Query: 265 IWMS-PRVGFIDIA-DRFCTGSSIMPQKKNPDVPELARGKTGRVNGHLISLLTLMKGQPL 322
           +  S P+ G  DI       GSSIMP K NP +PE+       V G+ +++    +G  L
Sbjct: 295 LLSSGPQAGIGDIQLPARQAGSSIMPGKVNPVIPEVMNQVAFEVIGNDVAITMASEGGQL 354

Query: 323 AYN 325
             N
Sbjct: 355 QLN 357


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 814,067
Number of extensions: 31069
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 464
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 379
Effective length of database: 720,272
Effective search space: 272983088
Effective search space used: 272983088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)