BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2901.p (274 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093840|ref|YP_001098915.1| hypothetical protein HEAR0587 [... 119 2e-28 gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [... 96 3e-21 gi|134096239|ref|YP_001101314.1| hypothetical protein HEAR3084 [... 73 2e-14 gi|134096000|ref|YP_001101075.1| hypothetical protein HEAR2840 [... 59 2e-10 >gi|134093840|ref|YP_001098915.1| hypothetical protein HEAR0587 [Herminiimonas arsenicoxydans] Length = 256 Score = 119 bits (297), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 2/215 (0%) Query: 24 IESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHVSRTVGTVEDAVLMLGFMTVRT 83 ++S + I I +K+ DQ L+AK LR ANSS+Y V V T++ A+ ++G +VR Sbjct: 1 MKSIGPDDDDINIITRKVMLDQALAAKTLRFANSSFYGVQAKVTTIQQAITLIGVDSVRH 60 Query: 84 LVVSTGMAGSF--KKLPGVDLKLFWRYSLDTAIVAKWLAKQAKLNSDFAFTVGLMHAIGQ 141 +V + + G F G++ WR+++ TA+ A+ LA+ +N D+AFT GL+H IG+ Sbjct: 61 VVTANALTGYFPSSSSAGLNFIAIWRHAIATAVCARVLARHLHVNQDYAFTAGLLHDIGR 120 Query: 142 LVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFADVGAELARRWRFPDEFGQVIKA 201 L++ + V D + LD E+ G D A G LA W F D I Sbjct: 121 LLLITYFRREYDTVIAYRKLHDCQWLDAEQAIMGIDHAMAGEALAGHWNFSDTIRHAIAG 180 Query: 202 FPQPLEGQFDPFAAIVHLAAWRARAQENQYSEDEM 236 +P + + A+IVH+A A + ED++ Sbjct: 181 HHKPEGQKSNSLASIVHIANAIVHALDLSGQEDDL 215 >gi|134093674|ref|YP_001098749.1| hypothetical protein HEAR0398 [Herminiimonas arsenicoxydans] Length = 475 Score = 95.5 bits (236), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 4/185 (2%) Query: 11 TALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHVSRTVGTVE 70 T LP++P V +IE N+ ++++ ++A+ +A+D LSAK+L++ANS Y R + Sbjct: 13 TVLPTLPSVAFRIIELVNDPNINLTQLAECIASDPALSAKMLKVANSPLYTTQRVATNLR 72 Query: 71 DAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKLFWRYSLDTAIVAKWLAKQAKLNSDFA 130 AV M+G T+ +S + S G LFWR ++ A+ + L K NSD Sbjct: 73 QAVNMMGTHATVTVALSFSLVRSLSGHEGN--TLFWRRTILAALACRLLGKHYGFNSDDL 130 Query: 131 FTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFADVGAELARRWR 190 GL+ IG L + + P++ ++ + + L ER FG +VG L +RW Sbjct: 131 LLAGLLQDIGILALRSVAPDEYAELQAITDHEEL--LKAERNRFGSGHDEVGYWLLKRWG 188 Query: 191 FPDEF 195 P+ Sbjct: 189 IPEHL 193 >gi|134096239|ref|YP_001101314.1| hypothetical protein HEAR3084 [Herminiimonas arsenicoxydans] Length = 504 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 49/203 (24%), Positives = 100/203 (49%), Gaps = 10/203 (4%) Query: 8 QQQTALPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHV-SRTV 66 +Q+ LP +VV ++ + + ++ + K + +D L+ ++LRLANS+ Y + + Sbjct: 23 RQRGDLPGFSRVVSAIVGAMHGDNDREFNMTKTVLSDPTLTQRVLRLANSAMYSAFGQGI 82 Query: 67 GTVEDAVLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKL-FWRYSLDTAIVAKWLAKQ--- 122 TV AV++LG T+ L + + L L R ++ A++A +A+Q Sbjct: 83 NTVSKAVIVLGTETIGHLALGLKL---IDGLSAASLATSHTRNEMEKAVLAGQIARQVAS 139 Query: 123 --AKLNSDFAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARRLDVERKSFGYDFAD 180 + +++ A ++H++G+L++ +PEQ QV VA + + ++ G + Sbjct: 140 SSTRRDTEEAVVCSILHSLGRLMVSFYLPEQWTQVQAVAAEKNIAENEAAQEVLGIGLDE 199 Query: 181 VGAELARRWRFPDEFGQVIKAFP 203 +G+ + +RW FP +K P Sbjct: 200 IGSLIGKRWGFPYSLVASLKEMP 222 >gi|134096000|ref|YP_001101075.1| hypothetical protein HEAR2840 [Herminiimonas arsenicoxydans] Length = 286 Score = 58.9 bits (141), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 9/198 (4%) Query: 13 LPSIPKVVQEVIESFNNESVSIEEIAKKLAADQVLSAKILRLANSSYYHVSRTVGTVEDA 72 +P P ++ + ++ + ++ A + D ++ +L++ANS+++++ R + +VE+A Sbjct: 23 IPPRPALLMALQREIQQDNPNSKKFASLIRRDVAMAGTLLQIANSAFFNLGRHIASVEEA 82 Query: 73 VLMLGFMTVRTLVVSTGMAGSFKKLPGVDLKL---FWRYSLDTAIVAKWLAKQAK-LNSD 128 + ++G ++ +G+ KK G K+ FW S AI LAK+ + L S+ Sbjct: 83 ITLIGLNQCNAIM--SGLI--LKKSLGFGNKMMARFWDGSEKRAIGLSILAKRTRNLPSE 138 Query: 129 FAFTVGLMHAIGQLVMHAGMPEQALQVDKVAGPLDARR-LDVERKSFGYDFADVGAELAR 187 A++ GL G ++ P+ L A A L VE + G + +GA LA Sbjct: 139 IAYSFGLFCDTGIPLLKGAFPKTYLDTLLQANRKAAEEFLQVEDERHGVNHTVIGALLAE 198 Query: 188 RWRFPDEFGQVIKAFPQP 205 RW E I+ P Sbjct: 199 RWSLAPEVVLAIRMHHTP 216 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 501,224 Number of extensions: 19780 Number of successful extensions: 68 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 64 Number of HSP's successfully gapped: 4 Length of query: 274 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 194 Effective length of database: 736,747 Effective search space: 142928918 Effective search space used: 142928918 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)