BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2898.p
         (318 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094241|ref|YP_001099316.1| porphobilinogen deaminase [Herm...   426   e-121

>gi|134094241|ref|YP_001099316.1| porphobilinogen deaminase
           [Herminiimonas arsenicoxydans]
          Length = 317

 Score =  426 bits (1094), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/318 (70%), Positives = 261/318 (82%), Gaps = 1/318 (0%)

Query: 1   LKEFPPSNIVIVSRESRLAMWQAEYVRDRLAALYPQCSINILGTTTRGDQILDRALSKVG 60
           +K  PP  +VI SRESRLAMWQAE+VR++LA LYPQC+I ILG TTRGDQILDR LSKVG
Sbjct: 1   MKFPPPKKLVIASRESRLAMWQAEHVREKLALLYPQCAIEILGMTTRGDQILDRTLSKVG 60

Query: 61  GKGLFVKELEVAMAEGRADLAVHCLKDMPMDLPEGFELAAVLEREDPRDAFVSNDFAALD 120
           GKGLFVKELEVA+AE RADLAVH LKD+PM LPEGF LAAVLEREDPRDAFVSND+A+LD
Sbjct: 61  GKGLFVKELEVAIAERRADLAVHSLKDVPMSLPEGFALAAVLEREDPRDAFVSNDYASLD 120

Query: 121 ALPPGAIVGTSSLRRQAMIASRYPQLVVKPLRGNLDTRLAKLDRGDYAAIILAVAGLNRL 180
            LP GAIVGTSSLRRQA+IA+RYP+LV++PLRGNLDTRL KLD+G+YAAIILA AGL RL
Sbjct: 121 DLPDGAIVGTSSLRRQALIAARYPKLVIRPLRGNLDTRLGKLDKGEYAAIILAAAGLKRL 180

Query: 181 GLKARIRSFLDPEQSLPSPGQGTLAIEIPAGRDDIKRLLAPLHDEPAAVVSAAERSVSRI 240
           G+  RIR+ LDPEQSLP+PGQG + IEI A R D++  LAPL+ E  A    AER+VSR 
Sbjct: 181 GMPQRIRAVLDPEQSLPAPGQGAMGIEIHADRADLQEWLAPLNHEATAQAVTAERTVSRN 240

Query: 241 FGASCQIPLAAYATLQGQRLHLRAMIATPDGAQAAAAQAEGSADAPEALGAQVADLLKAR 300
           FG SCQIPLAA+AT++   + LRAMIATPDG + A A   G+A APEALG Q+A+LL  +
Sbjct: 241 FGGSCQIPLAAFATIENGTMRLRAMIATPDGKRVARADLNGAAHAPEALGGQIAELLHQQ 300

Query: 301 GADAILALCKAQADAASA 318
            A+AIL  CK + DA +A
Sbjct: 301 EANAILESCKTE-DAGNA 317


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 526,560
Number of extensions: 20073
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 236
Effective length of database: 730,157
Effective search space: 172317052
Effective search space used: 172317052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)