BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2897.p
         (259 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094242|ref|YP_001099317.1| uroporphyrinogen III synthase [...   229   1e-61

>gi|134094242|ref|YP_001099317.1| uroporphyrinogen III synthase
           [Herminiimonas arsenicoxydans]
          Length = 260

 Score =  229 bits (583), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 131/248 (52%), Positives = 163/248 (65%)

Query: 7   VVVTRPLQQAQAFAASVEQLGRRAVIFPLLTIGPVADDAELKATLAHLHEFALVVFVSPN 66
           VV+TRPL QA+  A  V  LGR+A +FPLL I P+AD A L+  L  L  +AL+ FVSPN
Sbjct: 9   VVITRPLAQAEGLARRVTALGRKATVFPLLDILPLADQASLQQALRDLSGYALIAFVSPN 68

Query: 67  AIDAAFAHLSGWPSQVPIGIVGEGSRLALRAHGVDNSNATLYGPQRADKMDSEELLKSLP 126
           AIDAA A  + WP  +P+ +VGEGSRLAL  HG+   N+T+  P   D+ DSE LL  L 
Sbjct: 69  AIDAALAARADWPRDIPMAVVGEGSRLALARHGLTAENSTIISPTDLDRTDSETLLAELD 128

Query: 127 MEQLRNKRALIVRGQTGRDFLSEALQQHGVTVEHLTAYRRLAPTLDARSGALLLDLLDGG 186
           +  LRNK+ LIVRG+TGR  LSEAL+  G  V  L AYRR+AP  DA     L  LL G 
Sbjct: 129 LPALRNKQILIVRGETGRPLLSEALRAAGAQVTLLAAYRRVAPVFDATRRRELKRLLHGQ 188

Query: 187 ADWVITSSEALRNLLDLARLAGGEERVVKLQRQRIVVSHHRIAETARQQGFVQVILTGSG 246
            DW++TSSEALR L+ +       E V K+Q+QRI+VSH RI ETA+  GF  + +T SG
Sbjct: 189 NDWIVTSSEALRFLMQMVAQLDEAEGVAKMQQQRIIVSHIRIGETAQLLGFSNITVTRSG 248

Query: 247 DERLLAAL 254
           D+ LLAAL
Sbjct: 249 DDGLLAAL 256


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 394,000
Number of extensions: 14127
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 179
Effective length of database: 736,747
Effective search space: 131877713
Effective search space used: 131877713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)