BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2895.p
         (399 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094244|ref|YP_001099319.1| hypothetical protein HEAR1010 [...   499   e-143

>gi|134094244|ref|YP_001099319.1| hypothetical protein HEAR1010
           [Herminiimonas arsenicoxydans]
          Length = 398

 Score =  499 bits (1285), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 260/398 (65%), Positives = 320/398 (80%)

Query: 1   MKILLWLLTLFASAIGLAVLARFNPGNVVLFYPPYRIDLSLNFFIFAALALFVAIYVVIR 60
           M+I LWL+ LFA+AIGLAV+ARFNPGNVV FYPPYRIDLSLNFF+  A+ LF  IY+V++
Sbjct: 1   MRIFLWLIALFATAIGLAVVARFNPGNVVFFYPPYRIDLSLNFFLLLAVLLFFLIYLVLK 60

Query: 61  AIRLTQKLPGRVIAYRRAKRENESNKALRDALKAYFEGRFGQAEKSATRASDLPENAGIA 120
            +R+ Q +PGRV AYRR KRE + N+ALR++LKAYFEGRFG AEK+A RA++ PENAG+A
Sbjct: 61  TLRVAQGMPGRVAAYRREKRERKGNQALRESLKAYFEGRFGHAEKAAMRATESPENAGLA 120

Query: 121 ALVAARAAHRMRQGDRRDIWLASTEVDPSLKAARLMTALELQVDEHHFKQALQTVEELNA 180
           AL+AARAAHRM+Q +RRD WLA+ E D +LK ARLMTA+EL VDE   + AL  V+ELNA
Sbjct: 121 ALIAARAAHRMQQTERRDTWLATVEEDQTLKTARLMTAIELLVDERQPELALDVVKELNA 180

Query: 181 NGTRHIQALQWALKANQQAKNWPEVLRLVQTLDKRNALHPALSNRLREMSYDALLSDRSH 240
           NGTRHI AL+ ALKANQ+A NWPEVLRLV+TLDK NALHPALS+RLRE++Y  LL + S+
Sbjct: 181 NGTRHIHALRMALKANQRAGNWPEVLRLVRTLDKNNALHPALSSRLRELAYQDLLKNPSN 240

Query: 241 DAESIRLLWNGVPGADKLKPYIAVRAAQAFASRGLHDDARGLLERALAADWDIRLLRAYR 300
           D E+IR +W  +P  D++KP++A  AA+AF  RGL D+AR ++E+ALAA+WD RLLRAYR
Sbjct: 241 DEEAIRNVWLSIPAEDRIKPFVAAHAAEAFTKRGLQDEARAIVEKALAAEWDDRLLRAYR 300

Query: 301 DSTAEAGSPALLSQIEHCESWLAKNPTDAELALTLGMFCLRQKLWGKAQRHLEQALSDAI 360
            +    G+PALL QIE CE W+ K+P D ELALTLG  CLRQ LWGKAQR LEQALSDA 
Sbjct: 301 AAAGAEGTPALLGQIERCEEWVKKHPADPELALTLGTLCLRQNLWGKAQRQLEQALSDAS 360

Query: 361 EPRTVRESHLALAQLHEALDQPEQAAGHYKQCALATAI 398
             R ++E HL LAQLHEAL+  E+AA HY+ CA+AT +
Sbjct: 361 GARMLQEVHLKLAQLHEALNHTEEAAAHYRLCAVATTL 398


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 684,557
Number of extensions: 24452
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 315
Effective length of database: 723,567
Effective search space: 227923605
Effective search space used: 227923605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)