BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2892.p
         (498 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094831|ref|YP_001099906.1| putative signal peptide [Hermin...   134   8e-33

>gi|134094831|ref|YP_001099906.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 700

 Score =  134 bits (338), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 139/293 (47%), Gaps = 50/293 (17%)

Query: 38  QQLDQMLAPVALYPDSLLAQVLMASTYPLEVVQAQRFVEARPGLQGDGLARAVAPMPWDP 97
           +QL QM+AP+AL+PD L+AQVL  S+YP ++  A  ++   P L+G+ L  A    PWD 
Sbjct: 81  EQLLQMVAPIALFPDKLVAQVLAGSSYPDQITAANLWLGQNPSLKGEALQNAANLQPWDV 140

Query: 98  SVKALVQFPSVLAMLNDRLDWMQQLGQAFLAQQPAVMDTVQNLRERARIAGTLESSPQQR 157
           SVK+L  FP+VLA + + + W   LG+A++     VM+ +Q +R RA+ +G L++S Q R
Sbjct: 141 SVKSLTAFPAVLAQMANNIQWTTALGEAYVNDSDDVMNAIQTMRLRAQQSGNLKTSQQMR 200

Query: 158 VVVQ---------------------EDVIEIVPVNPQVVYVPYYNPTVVYGSWWWPSAPP 196
           V                           I I    P +VYVP YNP +VYG+       P
Sbjct: 201 VTSSPRLAPPPDYADEAGYFVIAPPSQTIVIESAQPDMVYVPNYNPALVYGA-------P 253

Query: 197 LVWVPPPRYRPPSYSSG--FSAS-ISFSSGIGVMSAF-----FG-------------DAR 235
           +   P   Y  P YSSG  F+A  ISF  GI V SA      +G              + 
Sbjct: 254 IPVYPSYVYN-PGYSSGDMFTAGIISFGLGILVGSAINHHDGWGWHSWGMNWGGRGPGSG 312

Query: 236 PDWRQRQVLVTQTRINNITNNVTNVTNVNNTNVVNNRIVNNNVTINRNVAFNS 288
           PD+         + + N T  V+  T + N N    RI NN  T N N    S
Sbjct: 313 PDYGANHGWRHPSVVYNDTTYVSRSTTIINRNHNPARISNNFGTPNNNAPGGS 365


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.128    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 495,399
Number of extensions: 14159
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 412
Effective length of database: 716,977
Effective search space: 295394524
Effective search space used: 295394524
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)