BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2890.p (541 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 384 e-108 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 371 e-104 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 367 e-102 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 365 e-102 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 358 e-100 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 384 bits (986), Expect = e-108, Method: Compositional matrix adjust. Identities = 215/331 (64%), Positives = 267/331 (80%), Gaps = 5/331 (1%) Query: 185 LYQAVLMSLVVCAIVGM-----VSVVISRTISSALGEAIQAARAIATGDLSTRIRGRAND 239 +YQ+ M L+V +V + ++ +++R+I+ L A+ AR +A+GDL+ RI + D Sbjct: 182 IYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRITVDSKD 241 Query: 240 EVGQLMQAIQQMTDSLVRIVSNVRNSASTIDTASAEIAAGNLDLSSRTEAQAGSIEETAS 299 E GQL+QA++ M DSL ++ VR+ TI TAS +IA+GNLDLSSRTE QA S+EETAS Sbjct: 242 ETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETAS 301 Query: 300 AMEQLTSTVRQNADNAQEANTLASSASSVATEGGHAVQQVVETMAAINASSLKIVDIISV 359 +ME+LTSTV+QNADNA++AN LA +AS VA +GG V +VV+TM IN S+ KIVDII V Sbjct: 302 SMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGV 361 Query: 360 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSVSK 419 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK LIDDSV K Sbjct: 362 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDK 421 Query: 420 VESGSRLVTQAGSTMQQVVESVRRVTDIVGDITAASAEQSDGIVQVNQAIGMMDQATQQN 479 V++GS+LV +AG+TM +VV+SV+RVTDI+ +I AAS EQS GI QVNQAIG MDQ TQQN Sbjct: 422 VDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQN 481 Query: 480 AALVEQAAAASQSLREQAVNLAQAVGVFRLE 510 AALVE+AAAA++SL EQA NLAQAV +F+L+ Sbjct: 482 AALVEEAAAAAESLNEQAANLAQAVSIFKLD 512 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 371 bits (953), Expect = e-104, Method: Compositional matrix adjust. Identities = 212/304 (69%), Positives = 249/304 (81%) Query: 207 SRTISSALGEAIQAARAIATGDLSTRIRGRANDEVGQLMQAIQQMTDSLVRIVSNVRNSA 266 SR+I+ L A++ AR +A GDL RI ++DE GQL+QA++ M D LV+ VS VR Sbjct: 213 SRSITRPLEYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGI 272 Query: 267 STIDTASAEIAAGNLDLSSRTEAQAGSIEETASAMEQLTSTVRQNADNAQEANTLASSAS 326 TI TAS +IAAGNLDLSSRTE QA S+EETAS+ME+LTSTV+QNADNA++AN LA SAS Sbjct: 273 ETIATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSAS 332 Query: 327 SVATEGGHAVQQVVETMAAINASSLKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGR 386 VA +GG V QVV+TM IN+S+ KIVDII VIDGIAFQTNILALNAAVEAARAGEQGR Sbjct: 333 GVAEKGGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGR 392 Query: 387 GFAVVASEVRSLAQRSAAAAKEIKELIDDSVSKVESGSRLVTQAGSTMQQVVESVRRVTD 446 GFAVVASEVR+LAQRSAAAAKEIK LI DSV KV+ GS+LV +AG TM++VV SV+RVTD Sbjct: 393 GFAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTD 452 Query: 447 IVGDITAASAEQSDGIVQVNQAIGMMDQATQQNAALVEQAAAASQSLREQAVNLAQAVGV 506 I+ +I AAS EQS GI QVNQAIG MDQ TQQNAALVE+AAAA++SL EQA LA+AV V Sbjct: 453 IMSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSV 512 Query: 507 FRLE 510 F+L+ Sbjct: 513 FKLD 516 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust. Identities = 220/397 (55%), Positives = 294/397 (74%), Gaps = 6/397 (1%) Query: 115 RDAFADYEKSRQTVLALGAEGKTEQALQAVEQLVVPPGDKLINALAAHRRYNEQLGRQAA 174 R A+ D R+++L + A G +A Q ++ +VP D ++++ + E + A Sbjct: 122 RSAYIDI---RKSILGVKAGGNIAEANQMIDTKMVPALDAYVDSVKNVLGHYENEVKLAD 178 Query: 175 QSAQDSLHSALYQAVLMSLVVCAIVG-MVSVVISRTISSALGEAIQAARAIATGDLSTRI 233 +S D S A+++ V+ ++G +++ ++ I+ L EA++ A ++A GDL+ R Sbjct: 179 ESITDDYLSG-RMALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARS 237 Query: 234 -RGRANDEVGQLMQAIQQMTDSLVRIVSNVRNSASTIDTASAEIAAGNLDLSSRTEAQAG 292 DE G L+ A+ +M +LVR V+ +R TI TAS+EIA+GNLDLSSRTE QA Sbjct: 238 DMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQAS 297 Query: 293 SIEETASAMEQLTSTVRQNADNAQEANTLASSASSVATEGGHAVQQVVETMAAINASSLK 352 S+EETAS+ME+LTSTV+QNADN+++AN LA +AS+VA +GG V QVV+TM AIN S+ K Sbjct: 298 SLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKK 357 Query: 353 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKEL 412 IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK L Sbjct: 358 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTL 417 Query: 413 IDDSVSKVESGSRLVTQAGSTMQQVVESVRRVTDIVGDITAASAEQSDGIVQVNQAIGMM 472 I DSV KV++GS+LV +AG+TM ++V+ V+RV DI+ +ITAAS EQSDGI QVNQA+ M Sbjct: 418 IGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQM 477 Query: 473 DQATQQNAALVEQAAAASQSLREQAVNLAQAVGVFRL 509 DQ TQQNAALVE+AAAA++SL++QA NLA+AV VFR+ Sbjct: 478 DQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRV 514 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 365 bits (937), Expect = e-102, Method: Compositional matrix adjust. Identities = 248/519 (47%), Positives = 325/519 (62%), Gaps = 19/519 (3%) Query: 3 ITNKLRLLLLAVVLGMASLTG--MSIYQSNKIADAASYTSTNIVPSLLVLGDAGEAVFRI 60 I+ K RLLL V +GM + G M I + N +PS + + + Sbjct: 5 ISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTRLLQA 64 Query: 61 RVGIWRYAASTDAATRAKLEK---SMSLESEKVLAAFERYQKENLTDATDTQLLQADRDA 117 R G+ A ++ K + L+SE+ + E L + + A R Sbjct: 65 RAGLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETLEERKVADEVTAKRIR 124 Query: 118 FADYEKSRQTVLALGAEGKTEQALQAVEQLVVPPGDKLINALAAHRRYNEQLG-RQAAQS 176 + +++ Q ++A G+ E+ VE ++V L +L +L + AA Sbjct: 125 Y--LKEAEQGLIAALRAGRNEE----VEDILVNKMPPLFQSLTKSTDELVELQMKSAATG 178 Query: 177 AQDSLHSALYQAVLMSLVVCAIVGMVSVVIS-----RTISSALGEAIQAARAIATGDLST 231 QDS L+ + VV ++G++ V I R I+ L E + IA+GDL++ Sbjct: 179 YQDS--QTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTS 236 Query: 232 RIRGRANDEVGQLMQAIQQMTDSLVRIVSNVRNSASTIDTASAEIAAGNLDLSSRTEAQA 291 I ++ +E+G LM +Q+M L V+ VR + I TA+ EIAAGNLDLSSRTE QA Sbjct: 237 NIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQA 296 Query: 292 GSIEETASAMEQLTSTVRQNADNAQEANTLASSASSVATEGGHAVQQVVETMAAINASSL 351 S+EETAS+ME+LTSTV+QN DNA++AN LA+SAS+VA +GG V VV TM AIN S+ Sbjct: 297 ASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSAR 356 Query: 352 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKE 411 KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK Sbjct: 357 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKH 416 Query: 412 LIDDSVSKVESGSRLVTQAGSTMQQVVESVRRVTDIVGDITAASAEQSDGIVQVNQAIGM 471 LIDDSV+KV++G+RLV +AG+TM +VV+SV+RVTDI+ +I AAS EQS GI QVN AI Sbjct: 417 LIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQ 476 Query: 472 MDQATQQNAALVEQAAAASQSLREQAVNLAQAVGVFRLE 510 MD+ TQQNAALVEQAAAA+ SLR+QA NL+ V VF+L+ Sbjct: 477 MDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQ 515 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 358 bits (918), Expect = e-100, Method: Compositional matrix adjust. Identities = 230/431 (53%), Positives = 301/431 (69%), Gaps = 12/431 (2%) Query: 86 ESEKVLAAFERYQKENLTDATDT--QLLQADRDAFADYEKSRQTVLALGAEGKTEQALQA 143 S+++ AF+ + LT ADR F EK+ Q +A G + Sbjct: 89 HSKEINQAFDAFMASTLTPEAKVLADKFAADRKIF--LEKALQPAIAASRGGNVLR---- 142 Query: 144 VEQLVVPPGDKLINALAAHRRYNEQLG-RQAAQSAQDS-LHSALYQAVLMSLVVCAIV-- 199 V ++V P ++LI + A L R+A ++ ++S + + + + ++ ++ Sbjct: 143 VTEIVNGPMEELITPVRAGVAALIDLELREAKKAFEESQTRFVMVRNISIGAIIFGVLLA 202 Query: 200 GMVSVVISRTISSALGEAIQAARAIATGDLSTRIRGRANDEVGQLMQAIQQMTDSLVRIV 259 G ++ + R I+ L +A+Q AR++A GDL+ +I + +E GQL+QA++ M DSL + V Sbjct: 203 GFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVNSTNETGQLLQALKDMNDSLSKTV 262 Query: 260 SNVRNSASTIDTASAEIAAGNLDLSSRTEAQAGSIEETASAMEQLTSTVRQNADNAQEAN 319 S VR TI AS EIA+GN DLSSRTEAQAGS+EETAS+ME+LTSTVRQNADNA++AN Sbjct: 263 SAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASSMEELTSTVRQNADNARQAN 322 Query: 320 TLASSASSVATEGGHAVQQVVETMAAINASSLKIVDIISVIDGIAFQTNILALNAAVEAA 379 L SA+ VA +GG V +VV TM +I SS KIVDII VID IAFQTNILALNAAVEAA Sbjct: 323 QLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIAFQTNILALNAAVEAA 382 Query: 380 RAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELIDDSVSKVESGSRLVTQAGSTMQQVVE 439 RAGEQGRGFAVVASEVR+LAQRSA AAKEIK LIDDSV KV++GS+LV QAGSTMQ++V Sbjct: 383 RAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGSKLVDQAGSTMQEIVT 442 Query: 440 SVRRVTDIVGDITAASAEQSDGIVQVNQAIGMMDQATQQNAALVEQAAAASQSLREQAVN 499 SV+ V DI+ +IT+AS EQSDGI QVNQAI MD+ TQQNAALVEQAAAA+QS+++QAV Sbjct: 443 SVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVEQAAAAAQSMQDQAVE 502 Query: 500 LAQAVGVFRLE 510 L+ AV +F+L+ Sbjct: 503 LSGAVAIFKLD 513 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.123 0.310 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 725,240 Number of extensions: 23874 Number of successful extensions: 183 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 15 Length of query: 541 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 455 Effective length of database: 716,977 Effective search space: 326224535 Effective search space used: 326224535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)