BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2889.p (539 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 368 e-103 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 350 1e-97 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 347 6e-97 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 343 1e-95 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 338 5e-94 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 368 bits (944), Expect = e-103, Method: Compositional matrix adjust. Identities = 245/520 (47%), Positives = 328/520 (63%), Gaps = 25/520 (4%) Query: 1 MTIAKKLYLLISAVILSLCALTALSIYQSHRVSDAASYSTQNTVPSILTLDQAIESVYAI 60 + I +L + +++ + +T + + + V+ A + T+ L A + + I Sbjct: 6 LKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKATVLMEEATIKERL----AQQWIKGI 61 Query: 61 RLNVARYFIEPTTRE-KIFPILEVLHEKTQAAFLKYEKEC---ISDAKDEKLLEQDRVAF 116 N R F T + + IL+ AA K + E + A+ +KLL Sbjct: 62 ETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAEKR 121 Query: 117 AAYEKARHQTLALVGTGQPSELQRAREELLVPAGNRLMKAL-----TEHKQYNEQLGRQE 171 A Y R + L + +ELQ A + PA + ++++ + + + GR + Sbjct: 122 ATYTAIRDDVMNL-REARGAELQNAIANKMKPAADAYIQSVEAVVNAQINNFEDAKGRVD 180 Query: 172 MDNAASILQSS---IVITASVSLLIGALVAGASLLLVRLIVSSLRHATHVADAISRYDLT 228 +I QS+ +++ V+L +G ++A +L R I L +A VA ++ DLT Sbjct: 181 -----TIYQSARMLLIVLGLVALTLGIVLA---WMLTRSITKPLDYAVSVARLVASGDLT 232 Query: 229 SKIDHAAHDEIGHLIQALKRMNDSLCKIIGSVGDSTSTIQVAAGEIASGNLDLSSRTEAQ 288 +I + DE G L+QALK MNDSL I V TI A+ +IASGNLDLSSRTE Q Sbjct: 233 GRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQ 292 Query: 289 AGSLEETVTAMGQLTATVRQNADNAHQANELAASASAIASQAGDVVNEVVVTMDAIHASS 348 A SLEET ++M +LT+TV+QNADNA QAN+LA +AS +A + G VV++VV TMD I+ S+ Sbjct: 293 ASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSA 352 Query: 349 LKIVGIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAREIK 408 KIV II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAA+EIK Sbjct: 353 RKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 412 Query: 409 ELIDDSVHKVGTGSHLVAEAGNSMEKVVHSVRRVTDIVGEISSASSEQSAGIEQIHQAIG 468 LIDDSV KV TGS LVAEAG +M +VV SV+RVTDI+ EI +AS EQSAGIEQ++QAIG Sbjct: 413 TLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIG 472 Query: 469 AMDDATQQNAALVEQAAAASQSLQEQAAHLVEAVGVFRLN 508 MD TQQNAALVE+AAAA++SL EQAA+L +AV +F+L+ Sbjct: 473 QMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLD 512 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 350 bits (897), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 197/303 (65%), Positives = 239/303 (78%) Query: 206 RLIVSSLRHATHVADAISRYDLTSKIDHAAHDEIGHLIQALKRMNDSLCKIIGSVGDSTS 265 R I L +A VA ++ DL ++I+ + DE G L+QAL+ MND L K + V Sbjct: 214 RSITRPLEYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIE 273 Query: 266 TIQVAAGEIASGNLDLSSRTEAQAGSLEETVTAMGQLTATVRQNADNAHQANELAASASA 325 TI A+ +IA+GNLDLSSRTE QA SLEET ++M +LT+TV+QNADNA QAN+LA SAS Sbjct: 274 TIATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASG 333 Query: 326 IASQAGDVVNEVVVTMDAIHASSLKIVGIISVIDGIAFQTNILALNAAVEAARAGEQGRG 385 +A + G VV++VV TM+ I++S+ KIV II VIDGIAFQTNILALNAAVEAARAGEQGRG Sbjct: 334 VAEKGGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 393 Query: 386 FAVVASEVRSLAQRSAAAAREIKELIDDSVHKVGTGSHLVAEAGNSMEKVVHSVRRVTDI 445 FAVVASEVR+LAQRSAAAA+EIK LI DSV KV GS LVAEAG +ME+VV+SV+RVTDI Sbjct: 394 FAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDI 453 Query: 446 VGEISSASSEQSAGIEQIHQAIGAMDDATQQNAALVEQAAAASQSLQEQAAHLVEAVGVF 505 + EI +AS EQSAGIEQ++QAIG MD TQQNAALVE+AAAA++SL EQA L EAV VF Sbjct: 454 MSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVF 513 Query: 506 RLN 508 +L+ Sbjct: 514 KLD 516 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 347 bits (891), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 206/333 (61%), Positives = 257/333 (77%), Gaps = 4/333 (1%) Query: 180 QSSIVITASVSL---LIGALVAG-ASLLLVRLIVSSLRHATHVADAISRYDLTSKIDHAA 235 Q+ V+ ++S+ + G L+AG + L+RLI L A +A +++ DLT +I + Sbjct: 181 QTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVNS 240 Query: 236 HDEIGHLIQALKRMNDSLCKIIGSVGDSTSTIQVAAGEIASGNLDLSSRTEAQAGSLEET 295 +E G L+QALK MNDSL K + +V T TI VA+GEIASGN DLSSRTEAQAGSLEET Sbjct: 241 TNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEET 300 Query: 296 VTAMGQLTATVRQNADNAHQANELAASASAIASQAGDVVNEVVVTMDAIHASSLKIVGII 355 ++M +LT+TVRQNADNA QAN+L SA+ +A + G VV+EVV+TM +I SS KIV II Sbjct: 301 ASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDII 360 Query: 356 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAREIKELIDDSV 415 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA+EIK LIDDSV Sbjct: 361 GVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSV 420 Query: 416 HKVGTGSHLVAEAGNSMEKVVHSVRRVTDIVGEISSASSEQSAGIEQIHQAIGAMDDATQ 475 HKV GS LV +AG++M+++V SV+ V DI+ EI+SAS EQS GIEQ++QAI MD+ TQ Sbjct: 421 HKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQ 480 Query: 476 QNAALVEQAAAASQSLQEQAAHLVEAVGVFRLN 508 QNAALVEQAAAA+QS+Q+QA L AV +F+L+ Sbjct: 481 QNAALVEQAAAAAQSMQDQAVELSGAVAIFKLD 513 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 343 bits (880), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 237/517 (45%), Positives = 321/517 (62%), Gaps = 19/517 (3%) Query: 3 IAKKLYLLISAVILSLCALT--ALSIYQSHRVSDAASYSTQNTVPSILTLDQAIESVYAI 60 I+ K LL++ V + + + A+ I ++ N +PS + + + Sbjct: 5 ISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTRLLQA 64 Query: 61 R--LNVARYFIEPTTREKIFPILEVLHEKTQAAFLKYEKECISDAKDEKLLEQDRVAFAA 118 R LN+ E+I E + +++ + KY I ++ K+ ++ Sbjct: 65 RAGLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETLEERKVADEVTAKRIR 124 Query: 119 YEKARHQTL-ALVGTGQPSELQRAREELLVPAGNRLMKALTEHKQYNEQLGRQEMDNAAS 177 Y K Q L A + G+ E+ E++LV L ++LT+ ++L +M +AA+ Sbjct: 125 YLKEAEQGLIAALRAGRNEEV----EDILVNKMPPLFQSLTKS---TDELVELQMKSAAT 177 Query: 178 ILQSS------IVITASVSLLIGAL-VAGASLLLVRLIVSSLRHATHVADAISRYDLTSK 230 Q S I A V +L+G + VA + L+R I L+ D I+ DLTS Sbjct: 178 GYQDSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSN 237 Query: 231 IDHAAHDEIGHLIQALKRMNDSLCKIIGSVGDSTSTIQVAAGEIASGNLDLSSRTEAQAG 290 I+ + +E+G L+ L++M L + V + + I A EIA+GNLDLSSRTE QA Sbjct: 238 IEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAA 297 Query: 291 SLEETVTAMGQLTATVRQNADNAHQANELAASASAIASQAGDVVNEVVVTMDAIHASSLK 350 SLEET ++M +LT+TV+QN DNA QAN+LA SASA+A + G VV++VV TMDAI+ S+ K Sbjct: 298 SLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARK 357 Query: 351 IVGIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAREIKEL 410 IV II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAA+EIK L Sbjct: 358 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHL 417 Query: 411 IDDSVHKVGTGSHLVAEAGNSMEKVVHSVRRVTDIVGEISSASSEQSAGIEQIHQAIGAM 470 IDDSV+KV G+ LVAEAG +M +VV SV+RVTDI+ EI +AS EQSAGIEQ++ AI M Sbjct: 418 IDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQM 477 Query: 471 DDATQQNAALVEQAAAASQSLQEQAAHLVEAVGVFRL 507 D+ TQQNAALVEQAAAA+ SL++QA +L V VF+L Sbjct: 478 DEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKL 514 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 338 bits (866), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 218/446 (48%), Positives = 295/446 (66%), Gaps = 15/446 (3%) Query: 97 KECISDAKDEKLLEQDRVAFAAYEKARHQTLALVGTGQPSELQRAREELLVPAGNRLM-- 154 ++ I+ K+++L + +AY R L + G +E + + +VPA + + Sbjct: 103 EDRINSDKEKELFAEVAKKRSAYIDIRKSILGVKAGGNIAEANQMIDTKMVPALDAYVDS 162 Query: 155 -KALTEHKQYNEQLGRQEMDNAASILQSSIVITASVSLLIGALVAGASLLLVRLIVSSLR 213 K + H + +L + + + + +++I A +++L+G L+A L I L Sbjct: 163 VKNVLGHYENEVKLADESITDDYLSGRMALIIGAVIAILLGTLIA---WRLTVGITRPLH 219 Query: 214 HATHVADAISRYDLTSKIDHA-AHDEIGHLIQALKRMNDSLCKIIGSVGDSTSTIQVAAG 272 A VA++++ DLT++ D A DE G L+ AL RM +L + + + T TI A+ Sbjct: 220 EALKVAESVAEGDLTARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDTIATASS 279 Query: 273 EIASGNLDLSSRTEAQAGSLEETVTAMGQLTATVRQNADNAHQANELAASASAIASQAGD 332 EIASGNLDLSSRTE QA SLEET ++M +LT+TV+QNADN+ QAN+LA +AS +A + G Sbjct: 280 EIASGNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTVAVKGGA 339 Query: 333 VVNEVVVTMDAIHASSLKIVGIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASE 392 VV++VV TM AI+ S+ KIV II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+E Sbjct: 340 VVSQVVDTMGAINNSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATE 399 Query: 393 VRSLAQRSAAAAREIKELIDDSVHKVGTGSHLVAEAGNSMEKVVHSVRRVTDIVGEISSA 452 VR+LAQRSAAAA+EIK LI DSV KV GS LVAEAG +M+++V V+RV DI+ EI++A Sbjct: 400 VRNLAQRSAAAAKEIKTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAA 459 Query: 453 SSEQSAGIEQIHQAIGAMDDATQQNAALVEQAAAASQSLQEQAAHLVEAVGVFRLNRQAQ 512 S EQS GIEQ++QA+ MD TQQNAALVE+AAAA++SLQ+QA +L EAV VFR+ Sbjct: 460 SQEQSDGIEQVNQAVSQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFRVG---- 515 Query: 513 WIAEGGQIQAPREAPAIAQSGALALP 538 G A AP QS A+ P Sbjct: 516 ----SGYATAQSAAPRTVQSTAMHKP 537 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.126 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 732,038 Number of extensions: 23343 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 15 Length of query: 539 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 453 Effective length of database: 716,977 Effective search space: 324790581 Effective search space used: 324790581 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)