BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2884.p
         (413 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093703|ref|YP_001098778.1| nitrite reductase [Herminiimona...   503   e-144
gi|134093893|ref|YP_001098968.1| rubredoxin-NAD(+) reductase [He...    94   1e-20

>gi|134093703|ref|YP_001098778.1| nitrite reductase [Herminiimonas
           arsenicoxydans]
          Length = 809

 Score =  503 bits (1295), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 237/396 (59%), Positives = 307/396 (77%), Gaps = 2/396 (0%)

Query: 14  LVVVGNGMAAMRTVEELLKLAPDLYDITVFGAEPHGNYNRIMLSPVLAGDKSIDDIMLNP 73
           LV+VGNGMA +RT+EEL K+APDLYDITVFGAEP+ NYNRI+LSPVLAG+++I DIMLN 
Sbjct: 3   LVMVGNGMAGVRTLEELRKIAPDLYDITVFGAEPYANYNRILLSPVLAGEQTIQDIMLND 62

Query: 74  RAWYQENGITLHAGDPVIHIDRRLRSVHAKSGLSVKYDRLLLATGSTPFIIPVPGHQLPG 133
             WY EN I LH G  ++ IDR  R V A  G + +YDRLLLATGS PF++P+PG  L G
Sbjct: 63  VDWYVENDIKLHLGKKIVKIDRVKRLVIADDGTTAEYDRLLLATGSNPFMLPIPGKNLEG 122

Query: 134 VIAFRDIQDVDTMLQAARTHRHAVVIGGGLLGLEAANGLMRQGMEVTVVHVTDALMNQQL 193
           VI++RDI D + M++AA+ H  AVVIGGGLLGLEAANGL  +GM+VTVVH+ D LM +QL
Sbjct: 123 VISYRDIYDTNAMIEAAKVHADAVVIGGGLLGLEAANGLKLRGMDVTVVHLPDTLMERQL 182

Query: 194 DKPAAELLKKALEAKGLRFLLNAHTEEIIGPD--RVTAVRFKDGSRIPADLVVMTAGVRP 251
           D  A ++L+K+LE +GL+FLL  +++E+IG +  RV A+RF DG+ IPA LVVM  G+RP
Sbjct: 183 DNVAGKMLQKSLEDRGLKFLLGKNSQEVIGDENGRVQALRFTDGTEIPAQLVVMAVGIRP 242

Query: 252 NIALAKSAGLHCERAIIVDDTLQTYDPRIYAVGECVQHRQATFGLVAPIWDQARVCGAHL 311
           N  LA+ AG++C R I+V DT+QTYDPRIY+VGECV HR   +GLVAP+++ A+VC  HL
Sbjct: 243 NTQLAEEAGIYCNRGIVVSDTMQTYDPRIYSVGECVNHRGTAYGLVAPLFEMAKVCANHL 302

Query: 312 AGAGHRRYVQQATATKLKVTGVDLYSAGDFIGGDDTEDLVVRDPRRGIYKRLVLRGSRLV 371
           A  G  RY    T+TKLKVTG+DL+SAG+F+GG+ TE++++ DP  G+YK+LVL+  +LV
Sbjct: 303 ANYGIGRYQGSVTSTKLKVTGIDLFSAGEFMGGEGTEEIMLSDPIGGVYKKLVLKEDKLV 362

Query: 372 GAVLYGDVKDGPWYFDLIQSGRDISAFRRELPFGQA 407
           GA LYGD  DG WYF+L++ G+DIS  R  L FG+A
Sbjct: 363 GACLYGDTVDGSWYFNLLREGKDISEIRDSLMFGEA 398


>gi|134093893|ref|YP_001098968.1| rubredoxin-NAD(+) reductase
           [Herminiimonas arsenicoxydans]
          Length = 403

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 139/315 (44%), Gaps = 15/315 (4%)

Query: 11  KPSLVVVGNGMAAMRTVEELLKLAPDLYDITVFGAEPHGNYNRIMLSPVLAGDKSIDDIM 70
           KP ++++G G+A      E  KL      + +   +  G Y++ MLS   A  K    ++
Sbjct: 2   KP-IIIIGAGLAGYTVAREFRKL-DKTTPLIMITEDSGGFYSKPMLSNAFAQGKGAQQLV 59

Query: 71  LNPRAWYQEN-GITLHAGDPVIHIDRRLRSVHAKSGLSVKYDRLLLATGSTPFIIPVPGH 129
            +      E    TL     V  ID   ++V   SG + ++++L+LA G+    + + G 
Sbjct: 60  THSATQMAEQLNATLMTDTRVNGIDTTAKTVD-TSGGTFEFEKLVLAVGAQTIQLGLKGD 118

Query: 130 QLPGVIAFRDIQDVDTMLQAARTHRHA-----VVIGGGLLGLEAANGLMRQGMEVTVVHV 184
               V++   I D     +      +A      ++G GL+G E A+ L   G  VT++  
Sbjct: 119 AADQVLSVNHIDDYAAFRERISAPNNANPVRITILGAGLIGCEFADDLAGAGHAVTLIDP 178

Query: 185 TDALMNQQLDKPAAELLKKALEAKGLRFLLNAHTEEIIGPDRVTAVRFKDGSRIPADLVV 244
           +   +        +E L+ AL A+G+ F L    E +        V   DG+ +  D+V+
Sbjct: 179 SSRPLAALAAPALSEGLQAALIARGVTFHLGTVAETVSQAGTDLRVTLADGNTVETDVVL 238

Query: 245 MTAGVRPNIALAKSAGLHCERAIIVDDTLQTYDPRIYAVGECVQHRQATFG------LVA 298
              G+RP++ LA +A L   R II+D T QT    IYA+G+C ++     G       +A
Sbjct: 239 SAVGLRPDLRLAHAAQLKTGRGIIIDSTGQTSATDIYALGDCAEYTWPADGSTRILPYIA 298

Query: 299 PIWDQARVCGAHLAG 313
           PI    R     L+G
Sbjct: 299 PIMTAGRAIARTLSG 313


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 772,530
Number of extensions: 32006
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 3
Length of query: 413
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 329
Effective length of database: 723,567
Effective search space: 238053543
Effective search space used: 238053543
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)