BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2882.p (857 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093703|ref|YP_001098778.1| nitrite reductase [Herminiimona... 420 e-118 gi|134093893|ref|YP_001098968.1| rubredoxin-NAD(+) reductase [He... 75 1e-14 >gi|134093703|ref|YP_001098778.1| nitrite reductase [Herminiimonas arsenicoxydans] Length = 809 Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust. Identities = 262/799 (32%), Positives = 414/799 (51%), Gaps = 50/799 (6%) Query: 1 MKIIVIGHGMVGHKFLECLAESGAGDLHVTILCEEPRPAYDRVHLSEFFAG-KSAEDLSL 59 MK++++G+GM G + LE L + +T+ EP Y+R+ LS AG ++ +D+ L Sbjct: 1 MKLVMVGNGMAGVRTLEELRKIAPDLYDITVFGAEPYANYNRILLSPVLAGEQTIQDIML 60 Query: 60 VAPGFFDAGQSPVQFDLKLNAKAQEIDLEHKQVRVNLSGVEQILSYDKLVLATGSYPFVP 119 ++ V+ D+KL+ + + ++ + R+ ++ YD+L+LATGS PF+ Sbjct: 61 NDVDWY------VENDIKLHLGKKIVKIDRVK-RLVIADDGTTAEYDRLLLATGSNPFML 113 Query: 120 TVAGNQRKDCFVYRTIEDLEAMLECGNRSKSGVVIGGGLLGLECAKALRDLKLETHVVEF 179 + G + YR I D AM+E VVIGGGLLGLE A L+ ++ VV Sbjct: 114 PIPGKNLEGVISYRDIYDTNAMIEAAKVHADAVVIGGGLLGLEAANGLKLRGMDVTVVHL 173 Query: 180 APRLMAVQVDDSGGRILRQKIEELGVTAHTQKNTVEIV-DGKQHTHRMNFEDGSHLETDM 238 LM Q+D+ G++L++ +E+ G+ KN+ E++ D + F DG+ + + Sbjct: 174 PDTLMERQLDNVAGKMLQKSLEDRGLKFLLGKNSQEVIGDENGRVQALRFTDGTEIPAQL 233 Query: 239 IVFSAGIRPRDELARHAGLKVGERGGIVIDNCCLTSDAAVYAIGECALWNGKIFGLVAPG 298 +V + GIRP +LA AG+ GIV+ + T D +Y++GEC G +GLVAP Sbjct: 234 VVMAVGIRPNTQLAEEAGIYCNR--GIVVSDTMQTYDPRIYSVGECVNHRGTAYGLVAPL 291 Query: 299 YDMARTAAKHLLSHRDDAIEVPQFNGADMSTKLKLMGVDVASIGDAHGKQAGSRSYQFTD 358 ++MA+ A HL ++ + ++ G+ STKLK+ G+D+ S G+ G + G+ +D Sbjct: 292 FEMAKVCANHLANY-----GIGRYQGSVTSTKLKVTGIDLFSAGEFMGGE-GTEEIMLSD 345 Query: 359 ERKQIYKKIVVSESGKHLLGAVMVGDAAEYGTLLQMMLNKIELPESPEFLILPQSDGKAK 418 +YKK+V+ E L+GA + GD + ++ ++ E + L+ +++ + Sbjct: 346 PIGGVYKKLVLKED--KLVGACLYGDTVDGSWYFNLLREGKDISEIRDSLMFGEAN-TTR 402 Query: 419 PG-------LGVDALPESAQICSCNNVSKGQLCAAVAS-GVTNIGDLKACTKAGTACGGC 470 PG A+P+SA++C CN V KG + A+ G+ I D++ TKA +CG C Sbjct: 403 PGDTGHEGFSKAAAMPDSAEVCGCNGVCKGTIVKAIKEKGLFTIEDVRKHTKASASCGSC 462 Query: 471 VPLVTQVMKAEMKKQGMAVNN--HVCEHFPYSRQEIHHLVRVGQIKSFDELLAKHGKGL- 527 LV Q++ A A + +C ++ QE+ +R ++ + + + Sbjct: 463 TGLVEQIIMATAGGDYSASSKAKSMCGCTDHTHQEVRDAIRAEKLLTVATTMERMNWRTP 522 Query: 528 -GCDICKPMVANVLASLWNDFVLKKEHAGLQDSNDYFL-----GNIQKDGTYSVVPRMAG 581 GC C+P + L S W H D ++ NIQKDGT+SV+PRM G Sbjct: 523 NGCTTCRPAINYYLISTW-------PHEARDDPQSRYINERAHANIQKDGTFSVIPRMWG 575 Query: 582 GEVTPDGLIAVGQIAKKYGLYT-KITGGQRVDLFGARVDQLPDIWEALIAAGFETGHAYG 640 GE + L + + K+ + T K+TGGQR+DL G + + L +W L G +G AY Sbjct: 576 GETSSSELRRIADVVDKFKIPTVKVTGGQRIDLLGVKKEDLRAVWHDL---GMPSGLAYA 632 Query: 641 KSLRTVKSCVGSTWCRYGVGDSVGFAVRLENRYKGLRSPHKIKFGVSGCTRECAEAQGKD 700 K LRTVK+CVGS WCR+G DS +LE++ + +PHK+K VSGC R CAE+ KD Sbjct: 633 KGLRTVKTCVGSEWCRFGTQDSTRMGQQLEHQLARMYAPHKVKLAVSGCPRNCAESGIKD 692 Query: 701 VGIIATDKGWNLYVCGNGGMKPRHAELIASDLDEATLTRYVDRFLMFYVRTADRLQRTST 760 VGII D GW +YV GNGG+K AE + Y FL Y L+RT Sbjct: 693 VGIIGVDSGWEIYVGGNGGIKTEVAEFFVKLKTHEEVLEYAGAFLQLYREEGWYLERTVH 752 Query: 761 WRENLEGGLAYLKSVVIDD 779 + + GL + K VI+D Sbjct: 753 YLARV--GLEHAKQKVIED 769 >gi|134093893|ref|YP_001098968.1| rubredoxin-NAD(+) reductase [Herminiimonas arsenicoxydans] Length = 403 Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 87/331 (26%), Positives = 137/331 (41%), Gaps = 35/331 (10%) Query: 3 IIVIGHGMVGHKFLECLAESGAGDLHVTILCEEPRPAYDRVHLSEFFA-GKSAEDLSLVA 61 II+IG G+ G+ + + ++ E+ Y + LS FA GK A+ L Sbjct: 4 IIIIGAGLAGYTVAREFRKLDK-TTPLIMITEDSGGFYSKPMLSNAFAQGKGAQQL---- 58 Query: 62 PGFFDAGQSPVQFDLKLNA------KAQEIDLEHKQVRVNLSGVEQILSYDKLVLATGSY 115 S Q +LNA + ID K V + E ++KLVLA G+ Sbjct: 59 -----VTHSATQMAEQLNATLMTDTRVNGIDTTAKTVDTSGGTFE----FEKLVLAVGAQ 109 Query: 116 PFVPTVAGNQRKDCFVYRTIEDLEAMLECGNRSKSG-----VVIGGGLLGLECAKALRDL 170 + G+ I+D A E + + ++G GL+G E A L Sbjct: 110 TIQLGLKGDAADQVLSVNHIDDYAAFRERISAPNNANPVRITILGAGLIGCEFADDLAGA 169 Query: 171 KLETHVVEFAPRLMAVQVDDSGGRILRQKIEELGVTAHTQKNTVEIVDGKQHTHRMNFED 230 +++ + R +A + L+ + GVT H E V R+ D Sbjct: 170 GHAVTLIDPSSRPLAALAAPALSEGLQAALIARGVTFHL-GTVAETVSQAGTDLRVTLAD 228 Query: 231 GSHLETDMIVFSAGIRPRDELARHAGLKVGERGGIVIDNCCLTSDAAVYAIGECA--LW- 287 G+ +ETD+++ + G+RP LA A LK G GI+ID+ TS +YA+G+CA W Sbjct: 229 GNTVETDVVLSAVGLRPDLRLAHAAQLKTGR--GIIIDSTGQTSATDIYALGDCAEYTWP 286 Query: 288 ---NGKIFGLVAPGYDMARTAAKHLLSHRDD 315 + +I +AP R A+ L R + Sbjct: 287 ADGSTRILPYIAPIMTAGRAIARTLSGERTE 317 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,662,700 Number of extensions: 70499 Number of successful extensions: 194 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 3 Length of query: 857 Length of database: 1,000,347 Length adjustment: 90 Effective length of query: 767 Effective length of database: 703,797 Effective search space: 539812299 Effective search space used: 539812299 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)