BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2881.p
         (435 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094872|ref|YP_001099947.1| putative nitrite extrusion prot...    86   5e-18

>gi|134094872|ref|YP_001099947.1| putative nitrite extrusion protein
           [Herminiimonas arsenicoxydans]
          Length = 412

 Score = 85.5 bits (210), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 117/275 (42%), Gaps = 22/275 (8%)

Query: 25  LAFFVCFFAWFACAPLMPVIKGEFHLTPGQIANINIAAVAVTILVRLIIGPMCDRFGPRK 84
            AF +CF  W   A L   +K +  L   +   +    V    L+R+ +G   DR+G R 
Sbjct: 17  FAFTICFAVWMIFAVLGIPVKTQLGLNETEFGLLTAMPVLSGSLIRVPLGIWTDRYGGRI 76

Query: 85  AYTGLLLVGAVPVIGVAFAQSYESFLFFRLLIGAVGASFVITQYHTSVMFAPNVVGTANA 144
            +  L+L   VP+  +++A  Y  FL   L +G  G SF +   + +  F     G A  
Sbjct: 77  VFFLLMLSSVVPIYMISYATEYWHFLVLGLFVGLAGGSFSVGTPYVARWFQKERRGLA-M 135

Query: 145 ATAGWGNAGGGVAQGVMPLLMAAMLMLGVSHAWGWRAALLVPGLLMLIMAALYWRFTQDC 204
              G GN+G  + + V P ++A         A+GW+    V  L ML+ A L+W F+   
Sbjct: 136 GIFGAGNSGSALTKFVAPAIIA---------AYGWQMLPNVYALGMLVTALLFWFFSYT- 185

Query: 205 PEGNYDDLRAAGVTIESGKRGGWASFRAAAANYRVWMLFITYGACFGVEIFIHNIAAIYY 264
              +      AGV+     +           + RVW     Y   FG  + +      YY
Sbjct: 186 ---DKSHQMPAGVSFSEQMK--------VLKDPRVWRYCQYYSVVFGGYVGLALWMTKYY 234

Query: 265 VEHFQLSLESAGIAAASFGLLALFARALGGFISDK 299
           V  +   ++ A + AA F L     RALGG+ISD+
Sbjct: 235 VTEYGFDMQLAALLAACFSLPGGVLRALGGWISDR 269


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 613,940
Number of extensions: 20344
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 351
Effective length of database: 723,567
Effective search space: 253972017
Effective search space used: 253972017
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)