BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2874.p
         (126 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095989|ref|YP_001101064.1| putative transmembrane protein ...    80   3e-17

>gi|134095989|ref|YP_001101064.1| putative transmembrane protein
          [Herminiimonas arsenicoxydans]
          Length = 110

 Score = 80.1 bits (196), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 57/89 (64%)

Query: 3  LTALALLLVFQCLGEGAAQLLGLPIPGPVIGMLLLLMAFLASPRLAQMMEPTSWSILQHL 62
          L  L +LL+FQ +GEG   LLGLP+PGPVIGMLLLL   +     A  + P S  +L H+
Sbjct: 2  LNTLLILLIFQTMGEGLVYLLGLPVPGPVIGMLLLLAYLIVKKNTAAKLAPASSQLLSHM 61

Query: 63 SLLFVPAGVGVIAAAGQLKGDLPAIVVAL 91
          +LLFVPAGVG+     ++  +   IVVAL
Sbjct: 62 ALLFVPAGVGISVHVHRIAEEWMPIVVAL 90


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 190,957
Number of extensions: 6032
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 54
Effective length of database: 763,107
Effective search space: 41207778
Effective search space used: 41207778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 123 (52.0 bits)