BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2873.p
         (246 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095988|ref|YP_001101063.1| putative transmembrane protein ...   213   7e-57

>gi|134095988|ref|YP_001101063.1| putative transmembrane protein
           [Herminiimonas arsenicoxydans]
          Length = 240

 Score =  213 bits (542), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 121/227 (53%), Positives = 165/227 (72%)

Query: 4   LARLTDVWVYLAASPLLGLTTTLVAYLVALWLYRRLGFNPLANPVLIAIAIVVSILAITH 63
           +  L  VWVYLA SPLL LT TL+AY +A  +Y + G + LANPV I++A++V +L +++
Sbjct: 1   MPNLNTVWVYLAGSPLLWLTATLLAYRIANLVYEKTGRSALANPVAISVALLVVVLYVSN 60

Query: 64  TPYQTYFEGAQFVHFMLGPATVALAMPLYKQWHNFRRAALPLMLGLAAGSITAVVSAVGI 123
           TPY+TYF+GAQFVHF+LGP TVALA+PLY Q    +R    L+ G   G   A+  A+ +
Sbjct: 61  TPYKTYFDGAQFVHFLLGPVTVALAIPLYLQIEKLKRNWFALLAGALIGGAAAITCAMSL 120

Query: 124 AYAMGASRTIVVSLAPKSATTPIAMAISERFGGLPSLTAVLVICTGILGAVLARYVLNVL 183
           A+A+GASR  ++S+APKS T PIAM I+E+ GGLP+LTAV+V+ TGI GA ++ Y+  ++
Sbjct: 121 AWALGASRLTILSMAPKSVTIPIAMGITEKIGGLPTLTAVMVMLTGIFGAGISHYIFKLM 180

Query: 184 RIDSHPVRGFALGVASHGIGTARALQVSAEMGAFAGLGMGLNGVFTA 230
           +I      GFALG  +HG+GTARA QVS E GAF+GL MGL+G+ TA
Sbjct: 181 KISDDTTCGFALGATAHGVGTARAFQVSEEAGAFSGLAMGLSGILTA 227


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 387,727
Number of extensions: 13341
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 167
Effective length of database: 740,042
Effective search space: 123587014
Effective search space used: 123587014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)