BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2872.p (303 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 236 1e-63 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 199 2e-52 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 181 5e-47 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 179 1e-46 gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herm... 114 4e-27 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 236 bits (601), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 124/286 (43%), Positives = 181/286 (63%), Gaps = 4/286 (1%) Query: 7 METFVAVVESGSFVAAVDITGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDEGRLYF 66 M+TFVAVVE+ SF AA SK VS+ V LE LG RLL+RTTRRLSLT+ G Y+ Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 67 ARCKELLESIQDVESEVGLNSDQACGRLRIGVPQDFGVEQLAPLWGKFTQQHPQITLNIT 126 RC ++L + + E ++ G L++ +P FG ++APL ++ +++P++ L+I Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 127 LSDRTIDLLEEGFDMAIRISTLGDSRMVARPLAPVRMIACASPEFLARHGTPTTPAELRE 186 L+DR +DL+E+G+D+AIR+ L +S ++AR LA R++ CASP +L HG P TP +L++ Sbjct: 121 LADRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLKQ 180 Query: 187 FPFISYSYRANGDEWSFKHLHGDT-CQVRVRSTVYVNNGATCRAMAIAGQGIAIQPDFIV 245 ++YSY ++GDEW F G T VRV + NNG R A+ G G+ QP FIV Sbjct: 181 HACLNYSYSSSGDEWVFG--KGKTRAAVRVDGPMRANNGDMLRLAALDGAGLIWQPHFIV 238 Query: 246 NAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLV 291 +QAG+LVEL + S E L ++ +YP+R HL KV+ D+LV Sbjct: 239 ADDVQAGRLVELMKDESDTE-LGIYAIYPSRKHLSAKVRTFVDYLV 283 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 199 bits (505), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 108/288 (37%), Positives = 165/288 (57%), Gaps = 2/288 (0%) Query: 7 METFVAVVESGSFVAAVDITGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDEGRLYF 66 ++TFVAV++SG+ AA GQ+ AVSR +S LE+ L LL RTTRR+ LTDEGRL+ Sbjct: 8 LKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDEGRLFL 67 Query: 67 ARCKELLESIQDVESEVGLNSDQACGRLRIGVPQDFGVEQLAPLWGKFTQQHPQITLNIT 126 + + +L ++ + E + + Q GRLRI F + + P +F +PQITL +T Sbjct: 68 KKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQITLELT 127 Query: 127 LSDRTIDLLEEGFDMAIRISTLGDSRMVARPLAPVRMIACASPEFLARHGTPTTPAELRE 186 +D+ DLLE D+AIRI L DS + AR L + ASP++L RHG PTTP +L Sbjct: 128 SNDQVADLLEHRTDIAIRIGNLQDSTLHARALTANPLHLLASPDYLQRHGMPTTPEQLAG 187 Query: 187 FPFISYSYRANGDEWSFKHLHGDTCQVRVRSTVYVNNGATCRAMAIAGQGIAIQPDFIVN 246 + + +G+ W +H G+ + V ++ ++G T RA+A+ GQGIA D++ Sbjct: 188 HQLLGFLQFESGNTWPIRHAGGEG--LTVTPALFASSGETLRALALHGQGIASLADYMTR 245 Query: 247 AAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLVEQF 294 I AG+LV + E + TG + +H +Y T L ++ +FL ++ Sbjct: 246 DDIAAGRLVRILENYYTGYRQQIHAVYYRNTQLSRRISCFLEFLQQKL 293 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 181 bits (458), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 97/303 (32%), Positives = 163/303 (53%), Gaps = 3/303 (0%) Query: 1 MDKLQAMETFVAVVESGSFVAAVDITGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 60 MDKL+ +E FV VE SF AA + V R++ LE+ LG+RLLHR+TRRL+LT+ Sbjct: 1 MDKLKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTE 60 Query: 61 EGRLYFARCKELLESIQDVESEVGLNSDQACGRLRIGVPQDFGVEQLAPLWGKFTQQHPQ 120 EG +Y C+++L + ES + ++ G L I P FG + +AP F +QHP Sbjct: 61 EGSVYLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPG 120 Query: 121 ITLNITLSDRTIDLLEEGFDMAIRISTLGDSRMVARPLAPVRMIACASPEFLARHGTPTT 180 + ++ L+DR +DL++EG+DM IRI D VA LA + + C +P++ +HG P T Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAANKRVVCGTPDYFKKHGKPKT 180 Query: 181 PAELREFPFISYSYRANGDE-WSFKHLHGDTCQVRVRSTVYVNNGATCRAMAIAGQGIAI 239 +L + ++++ + W F H G T VR + ++ N+G G GIA Sbjct: 181 LDDLAKHNCLAFNLQGGQQRGWYFNH-RGKTVSVRAQGSLDCNDGELLHRWMSEGLGIAW 239 Query: 240 QPDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLVEQFKVPPW 299 + + + + +++G L + + ++ E ++ +YP + ++P KV+ L + P + Sbjct: 240 RSVWEIQSQLESGTLETVLDDFAIPEYDIM-AVYPQQRNVPAKVRLFISHLKTMYSQPGY 298 Query: 300 CPR 302 R Sbjct: 299 WSR 301 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 179 bits (455), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 168/297 (56%), Gaps = 5/297 (1%) Query: 1 MDKLQAMETFVAVVESGSFVAAVDITGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTD 60 MD + + F +V+ GS AA G + P+VS++++ +E L +RLL+RTTRR+SLT Sbjct: 1 MDGISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTP 60 Query: 61 EGRLYFARCKELLESIQDVESEVGLNSDQACGRLRIGVPQDFGVEQLAPLWGKFTQQHPQ 120 EG +Y A L+ ++ +E + + A G L+I FG + P F + +P+ Sbjct: 61 EGEIYLADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPE 120 Query: 121 ITLNITLSDRTIDLLEEGFDMAIRISTLGDSRMVARPLAPVRMIACASPEFLARHGTPTT 180 + + + L+DR ++L+E+GFD IR L D+R+ AR +A R + CASP +L HG P T Sbjct: 121 VDVQLHLTDRPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKNHGIPLT 180 Query: 181 PAELREFPFISYSYRANGDEWSFKHLHGDTCQ--VRVRSTVYVNNGATCRAMAIAGQGIA 238 P +L++ I R + + + H T Q V+VR ++ N+G A A+ GQGI Sbjct: 181 PRDLQKHNCI--LLRESDEIYGSWHFSSGTKQETVKVRGSLSANDGECATAWALDGQGIV 238 Query: 239 IQPDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLYPTRTHLPPKVQRMRDFLVEQFK 295 ++ ++ V +++G+L + E W Q ++ ++PT+ HL K + + DF+++ F+ Sbjct: 239 VRSEWDVAPYLRSGRLRTVLEDWQL-PQADIYIVFPTKNHLSAKTRALVDFMLQAFE 294 >gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 114 bits (286), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 131/292 (44%), Gaps = 13/292 (4%) Query: 3 KLQAMETFVAVVESGSFVAAVDITGQSKPAVSRQVSELEQFLGIRLLHRTTRRLSLTDEG 62 +++ + F ES SF A G S V+R + +LEQ G L HR+TR++ +T G Sbjct: 4 EMELLRIFRVAAESSSFRDAAVRLGTSPQGVTRAIQQLEQHYGEVLFHRSTRQVRITAFG 63 Query: 63 RLYFARCKELLESIQDVESEVGLNSDQAC---GRLRIGVPQDFGVEQLAPLWGKFTQQHP 119 + + LE +D+ G SDQ G +RI P G + P + +HP Sbjct: 64 EGLLDQVRPALERFEDLWRTPG--SDQQASLSGTVRITAPHSLGTRAVLPALERVAARHP 121 Query: 120 QITLNITLSDRTIDLLEEGFDMAIRISTLGDSRMVARPLAPVRMIACASPEFLARHGTPT 179 ITL++ LSDR + ++EG D+ IR+ + DSR VAR A +++ A+P + + G P Sbjct: 122 DITLDVRLSDRISNTVDEGIDVGIRVGFMRDSRFVARKAADMKLPIVAAPRLIKKVGVPE 181 Query: 180 TPAELREFPFISYSYRANGDEWSFKHLHGDTCQVRVRSTVYVNNGATCRAMAIAGQGIAI 239 L P G W + H T+ +N A+AG A Sbjct: 182 NIDALSSLPATVALDINTGRPWPW-HFKAGRQWTPAAPTLVADNADMEMGAALAGIAFAQ 240 Query: 240 QPDFIVNAAIQAGQLVELFEGWSTGEQLVVHTLY---PTRTHLPPKVQRMRD 288 D++ I +G+LV + E E+ LY P R +P +V+ + D Sbjct: 241 LADYMAAPYIASGKLVRVLE----SEEPPAWGLYVYRPQRGPIPGRVRAVFD 288 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.136 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 521,687 Number of extensions: 19453 Number of successful extensions: 85 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 80 Number of HSP's successfully gapped: 9 Length of query: 303 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 222 Effective length of database: 733,452 Effective search space: 162826344 Effective search space used: 162826344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)