BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2870.p
         (305 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096150|ref|YP_001101225.1| putative signal peptide protein...    83   2e-17

>gi|134096150|ref|YP_001101225.1| putative signal peptide protein
           [Herminiimonas arsenicoxydans]
          Length = 311

 Score = 82.8 bits (203), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 134/308 (43%), Gaps = 27/308 (8%)

Query: 1   METRAHHVLIGLFTILVAGAALAFCLWLTKVGQDRDVDYYTVIFNEAVSGLSRGSPVQYS 60
           ME +AH +L G+FTI +  AA+   LW  +   +R    Y +    +V GL+  + V+Y 
Sbjct: 1   MENKAHALLAGIFTIALLIAAVLIALWFNRDRVERVP--YEIATTLSVPGLNPQAGVRYR 58

Query: 61  GIKVGDVVGLSLDPADPRKVRARIRVVGRAPIKEDTGAKLALAGITGTALIQL----TNG 116
           G+ VG V  +  DP  P ++  R  V    PI   T A L+  G+TG A +QL    TN 
Sbjct: 59  GLDVGRVDAVLFDPQKPGQILIRFSVSKDTPITHSTFATLSYQGVTGLAYVQLDDDETNT 118

Query: 117 S--PQSPRLVSKDGSDPIIIASPSPLTALLTNGEDLLTNVNEVLINAKLFLAPENARRLN 174
           +  P SP+ +++ G        P  L  L   G  +L    +V       L+  N + + 
Sbjct: 119 TLMPSSPKKIARIG------LRPGLLDTLQIRGLAILEQTEQVAKRVNSILSDANQKLIL 172

Query: 175 QTLAHLEQLTDTLAAQRGNVGATMQELAAAAHQANLAMQSANQLLGSRGNEAMGNLQKAM 234
                +    + +A     +  T+ ++ A A +A+  + S N+ L        GNL +  
Sbjct: 173 GAFTDVSNAANKVAKIPDQLQPTLDKMPALAAKADNVLVSLNK-LSDDATILTGNLNEFT 231

Query: 235 SSLAASSQQIETLIKQNQAALNNGAQGVA---EIGPAISELRGTLASVRAITRKLES--- 288
             L A    +      N A  N G+       EI P I+E R    S+RA+ R LE+   
Sbjct: 232 VRLNAPDGPLNGF---NSAVTNIGSTASMVEHEIVPLINETR---TSMRALNRTLETFNQ 285

Query: 289 DPGAYLLG 296
            P + L G
Sbjct: 286 RPQSILFG 293


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.131    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 517,975
Number of extensions: 19795
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 224
Effective length of database: 733,452
Effective search space: 164293248
Effective search space used: 164293248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)