BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2869.p (282 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096149|ref|YP_001101224.1| toluene tolerance efflux ABC tr... 241 2e-65 gi|134096235|ref|YP_001101310.1| ABC transporter ATP-binding pro... 177 4e-46 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 126 1e-30 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 116 1e-27 gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Her... 115 2e-27 >gi|134096149|ref|YP_001101224.1| toluene tolerance efflux ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 280 Score = 241 bits (616), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 125/265 (47%), Positives = 177/265 (66%), Gaps = 1/265 (0%) Query: 2 VNANATNHTNHTDST-VDNIIDVRGLRNQFGAQVVHDQLALQVRRGEILGVVGGSGTGKS 60 V NA + + T T II++ L QFG +VH+ L L + +GEI+ +VGGSG+GK+ Sbjct: 4 VTDNAMDCASTTPQTGAQPIIEIENLCTQFGDVIVHENLNLTINQGEIVSLVGGSGSGKT 63 Query: 61 VLLRSIVGLQRPAAGQVKVFGQDLSALSSEVRSRYERRFGVLFQQGALFSSLTVLENIAL 120 VLLR ++GL P G V+VFG+D++ ++ + + R+G+LFQ GALFSS TV +N+A Sbjct: 64 VLLRQMLGLNHPTRGTVRVFGEDINRITPQQLQQLRNRWGMLFQHGALFSSFTVFDNVAQ 123 Query: 121 PLTEYGGLNAEEARGVSAMKLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILF 180 P+ E L + R + +KL +AG+ K P+ LSGGMIKR ALARALAL+P++LF Sbjct: 124 PMRELRVLPKQLIRDAALLKLQMAGIGPEHALKMPSDLSGGMIKRVALARALALEPELLF 183 Query: 181 LDEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDTLYAICDRVAVLSAKRVLVAD 240 LDEPTAGLDP ++ +F LI TLRD + LTV +VTHDLDTL+A+ RVAVL+ KR++ Sbjct: 184 LDEPTAGLDPNASESFVDLIRTLRDEMQLTVVMVTHDLDTLFALSSRVAVLADKRIIAYC 243 Query: 241 RIEAVAAYDDAWIQQYFQGPRGRAA 265 V + +I+ +F+G RG+ A Sbjct: 244 EPGKVVEFKHPFIETFFRGERGQRA 268 >gi|134096235|ref|YP_001101310.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 267 Score = 177 bits (450), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 98/240 (40%), Positives = 143/240 (59%), Gaps = 1/240 (0%) Query: 19 NIIDVRGLRNQFGAQVVHDQLALQVRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVK 78 N++++R L +G + + +L + RG+++ V+GGSG+GK+ +LR I G P AG V Sbjct: 3 NLVEIRNLHFAYGERPILSELTMDFPRGKVIAVMGGSGSGKTTVLRLIGGQLLPQAGNVV 62 Query: 79 VFGQDLSALSSEVRSRYERRFGVLFQQGALFSSLTVLENIALPLTEYGGLNAEEARGVSA 138 V GQ +S + ++ R R+ G+LFQ GALF+ ++V +N+A PL E+ L + + Sbjct: 63 VDGQVVSEMDTKALYRMRRKMGMLFQHGALFTDMSVFDNVAFPLREHTDLPEQLIHDLVL 122 Query: 139 MKLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDR 198 MKL GL AA K PA +SGGM +R ALARA+ALDP ++ DEP AGLDPIS Sbjct: 123 MKLQAVGLRNAAQLK-PAEISGGMARRVALARAIALDPQLIMYDEPFAGLDPISMGMTAN 181 Query: 199 LILTLRDALGLTVFLVTHDLDTLYAICDRVAVLSAKRVLVADRIEAVAAYDDAWIQQYFQ 258 LI L DALG T LV+HD+ + I D V LS +V+ + A D +++Q+ Sbjct: 182 LIRKLNDALGSTTILVSHDVHESFLIADYVYFLSNGKVVAQGTPAEMMASTDPYVKQFVH 241 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 126 bits (316), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 119/225 (52%), Gaps = 21/225 (9%) Query: 21 IDVRGLRNQFGAQVVHDQLALQVRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKVF 80 I+V+ + +FG V + ++L+ GE+ ++G SG GK+ LLR I GL++P GQV + Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 81 GQDLSALSSEVRSRYERRFGVLFQQGALFSSLTVLENIALPLTEYGGLNAEEA---RGVS 137 G+D SA R ER+ G +FQ ALF +TV ENIA GL A S Sbjct: 63 GEDASA-----RHVRERQVGFVFQHYALFKHMTVFENIAF------GLRVRPAATRPSES 111 Query: 138 AMK------LALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFLDEPTAGLDPI 191 +K L L L A D+YP LSGG +R ALARALA++P +L LDEP LD Sbjct: 112 VIKEKVTKLLELVQLDWLA-DRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAK 170 Query: 192 SAAAFDRLILTLRDALGLTVFLVTHDLDTLYAICDRVAVLSAKRV 236 R + L D L +T VTHD + + D++ +++ V Sbjct: 171 VRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHV 215 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 116 bits (290), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 7/229 (3%) Query: 20 IIDVRGLRNQFGAQVVHDQLALQVRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKV 79 ++++R L +FG V D ++L + GE ++G SG GK+ LLR I G P AG++ + Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILL 62 Query: 80 FGQDLSALSSEVRSRYERRFGVLFQQGALFSSLTVLENIALPLTEYGGLNAEEARGVSAM 139 G DL+ + E +R +FQ ALF +TV NIA PL +E + V Sbjct: 63 DGVDLTGVPPE-----QRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEA 117 Query: 140 KLALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRL 199 + AA +YP LSGG +R ++ARAL P +L LDEP + LD Sbjct: 118 LEDVRLTGFAA--RYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIE 175 Query: 200 ILTLRDALGLTVFLVTHDLDTLYAICDRVAVLSAKRVLVADRIEAVAAY 248 ++ L+ +G+T VTHD A+ R+AV++ + D + +Y Sbjct: 176 LINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSY 224 >gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Herminiimonas arsenicoxydans] Length = 931 Score = 115 bits (289), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 120/220 (54%), Gaps = 7/220 (3%) Query: 21 IDVRGLRNQFGAQVVHDQLALQVRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKVF 80 I+ R L +FG D + ++RRGEI G +G +G GK+ ++ + GL + G+ +F Sbjct: 274 IEARDLTMRFGDFTAVDHVNFRIRRGEIFGFIGSNGCGKTTTMKVLTGLLAASEGRAWLF 333 Query: 81 GQDLSALSSEVRSRYERRFGVLFQQGALFSSLTVLENIALPLTEYGGLNAEEARGVSAMK 140 G ++ R RR G + Q +L+S L+V++N+ L + AE A M Sbjct: 334 GHEVDPHDIATR----RRVGYMSQSFSLYSELSVMQNLVLHARLFNVPEAEVAARAQQM- 388 Query: 141 LALAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRLI 200 L GL D P L GM +R +LA A+ P++L LDEPT+G+DP++ F RL+ Sbjct: 389 LTRFGLE-EEIDALPNKLPLGMRQRLSLAVAMVHGPELLILDEPTSGVDPVARDNFWRLL 447 Query: 201 LTLRDALGLTVFLVTHDLDTLYAICDRVAVLSAKRVLVAD 240 + L +T+F+ TH ++ CDR++++ A +VLV+D Sbjct: 448 IELSRRDRVTIFISTHFMNEAER-CDRISLMHAGKVLVSD 486 Score = 69.3 bits (168), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 86/182 (47%), Gaps = 8/182 (4%) Query: 25 GLRNQFGAQVVHDQLALQVRRGEILGVVGGSGTGKSVLLRSIVGLQRPAAGQVKVFGQDL 84 GLR +G V ++L + ++G++G G GKS LL G ++ G V G D+ Sbjct: 15 GLR--YGKTVALADISLDIPAQCMVGLIGPDGVGKSSLLALAAGARKMQQGSADVLGGDM 72 Query: 85 SALSSEVRSRYERRFGVLFQQ--GALFSSLTVLENIALPLTEYGGLNAEEARGVSAMKLA 142 R R + Q L+ +L+V EN+ +G AE R + ++ + Sbjct: 73 R--RKRHRDAVCPRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDAAERRRRIDSLTRS 130 Query: 143 LAGLPIAAGDKYPAALSGGMIKRAALARALALDPDILFLDEPTAGLDPISAAAFDRLILT 202 P + LSGGM ++ L AL DPD+L LDEPT G+DP++ A F LI Sbjct: 131 TGLFPFLT--RPVGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWSLIAG 188 Query: 203 LR 204 +R Sbjct: 189 IR 190 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 426,977 Number of extensions: 15288 Number of successful extensions: 175 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 50 Length of query: 282 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 201 Effective length of database: 733,452 Effective search space: 147423852 Effective search space used: 147423852 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)